EnhancerDB
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  3. vista27609[chr18:56208513-56208704]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27609[chr18:56208513-56208704]
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Tissue distribution of vista27609
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Transcription factor that possibly regulate vista27609[chr18:56208513-56208704]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 56208385 56208816 CTCF UCSC Txn Factor no Conserved 108338405
chr18 56208474 56208738 RAD21 UCSC Txn Factor no Conserved 108338415
chr18 56208516 56208528 INSM1 JASPAR yes 42715493
chr18 56208516 56208528 INSM1 JASPAR yes 110956955
chr18 56208575 56208585 BHLHE41 JASPAR yes 42715494
chr18 56208575 56208585 SREBF2 JASPAR yes 42715495
chr18 56208575 56208585 TFE3 JASPAR yes 42715496
chr18 56208575 56208585 TFEB JASPAR yes 42715497
chr18 56208575 56208585 TFEC JASPAR yes 42715498
chr18 56208575 56208585 BHLHE41 JASPAR yes 110956956
chr18 56208575 56208585 SREBF2 JASPAR yes 110956957
chr18 56208575 56208585 TFE3 JASPAR yes 110956958
chr18 56208575 56208585 TFEB JASPAR yes 110956959
chr18 56208575 56208585 TFEC JASPAR yes 110956960
chr18 56208587 56208606 CTCF JASPAR yes 42715499
chr18 56208587 56208606 CTCF JASPAR yes 110956961
chr18 56208596 56208602 YY1 JASPAR yes 42715500
chr18 56208596 56208602 YY1 JASPAR yes 110956962
chr18 56208597 56208611 TLX1 JASPAR yes 42715501
chr18 56208597 56208611 TLX1 JASPAR yes 110956963
chr18 56208598 56208612 TLX1 JASPAR yes 42715502
chr18 56208598 56208612 TLX1 JASPAR yes 110956964
chr18 56208622 56208633 GCM1 JASPAR yes 42715503
chr18 56208622 56208633 GCM1 JASPAR yes 110956965
chr18 56208623 56208633 GCM2 JASPAR yes 42715504
chr18 56208623 56208633 GCM2 JASPAR yes 110956966
chr18 56208628 56208643 NFYB JASPAR yes 42715505
chr18 56208628 56208643 NFYB JASPAR yes 110956967
chr18 56208630 56208646 NFYA JASPAR yes 42715506
chr18 56208630 56208646 NFYA JASPAR yes 110956968
chr18 56208631 56208649 NFYA JASPAR yes 42715507
chr18 56208631 56208649 NFYA JASPAR yes 110956969
chr18 56208635 56208639 H1TF2 TRANSFAC yes 42715508
chr18 56208635 56208639 NFE TRANSFAC yes 42715509
chr18 56208635 56208639 SRF TRANSFAC yes 42715510
chr18 56208635 56208639 H1TF2 TRANSFAC yes 110956970
chr18 56208635 56208639 NFE TRANSFAC yes 110956971
chr18 56208635 56208639 SRF TRANSFAC yes 110956972
chr18 56208640 56208654 GLIS3 JASPAR yes 42715511
chr18 56208640 56208654 ZIC1 JASPAR yes 42715512
chr18 56208640 56208654 GLIS3 JASPAR yes 110956973
chr18 56208640 56208654 ZIC1 JASPAR yes 110956974
chr18 56208640 56208655 ZIC3 JASPAR yes 42715513
chr18 56208640 56208655 ZIC4 JASPAR yes 42715514
chr18 56208640 56208655 ZIC3 JASPAR yes 110956975
chr18 56208640 56208655 ZIC4 JASPAR yes 110956976
chr18 56208644 56208658 PLAG1 JASPAR yes 42715515
chr18 56208644 56208658 PLAG1 JASPAR yes 110956977
chr18 56208654 56208664 SP1 JASPAR yes 42715516
chr18 56208654 56208664 SP1 JASPAR yes 110956978
chr18 56208669 56208674 TFAP2A TRANSFAC yes 42715517
chr18 56208669 56208674 TFAP2A TRANSFAC yes 110956979
chr18 56208669 56208675 MZF1 JASPAR yes 42715518
chr18 56208669 56208675 MZF1 JASPAR yes 110956980
SNP sites on vista27609[chr18:56208513-56208704]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 56208523 rs145412784 G T
CTCF INSM1 RAD21
5285611
chr18 56208603 rs115650457 G A
CTCF RAD21 TLX1
5285612
chr18 56208614 rs370740773 C CATGAGGA
CTCF RAD21
5285613
Genes possibly regulated by vista27609[chr18:56208513-56208704]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 56148479 56296189 - ALPK2 ENSG00000198796.6 56296189 0.97 0.97 16612 12515
Expression level of Genes
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miRNAs possibly regulated by vista27609[chr18:56208513-56208704]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results