EnhancerDB
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  3. vista27611[chr18:56212323-56212488]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27611[chr18:56212323-56212488]
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Tissue distribution of vista27611
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Transcription factor that possibly regulate vista27611[chr18:56212323-56212488]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 56212218 56212615 NFIC UCSC Txn Factor no Conserved 108338475
chr18 56212266 56212514 BATF UCSC Txn Factor no Conserved 108338483
chr18 56212324 56212336 IRF1 JASPAR yes 42715581
chr18 56212324 56212339 STAT2 JASPAR yes 42715582
chr18 56212352 56212373 ZNF263 JASPAR yes 42715583
chr18 56212360 56212375 PRDM1 JASPAR yes 42715584
chr18 56212366 56212379 ELF1 JASPAR yes 42715585
chr18 56212367 56212380 ELF3 JASPAR yes 42715586
chr18 56212368 56212379 ELF5 JASPAR yes 42715587
chr18 56212369 56212380 FLI1 JASPAR yes 42715588
chr18 56212370 56212375 ETS2 TRANSFAC yes 42715589
chr18 56212370 56212378 FEV JASPAR yes 42715590
chr18 56212371 56212378 SPI1 JASPAR yes 42715591
chr18 56212416 56212434 IRF2 JASPAR yes 42715592
chr18 56212419 56212434 PRDM1 JASPAR yes 42715593
chr18 56212450 56212465 FOXP1 JASPAR yes 42715594
chr18 56212451 56212466 FOXP1 JASPAR yes 42715595
chr18 56212452 56212467 FOXP1 JASPAR yes 42715596
chr18 56212452 56212473 IRF1 JASPAR yes 42715597
chr18 56212453 56212468 FOXP1 JASPAR yes 42715598
chr18 56212455 56212470 FOXP1 JASPAR yes 42715599
chr18 56212456 56212471 STAT2 JASPAR yes 42715600
chr18 56212457 56212472 FOXP1 JASPAR yes 42715601
chr18 56212459 56212479 RREB1 JASPAR yes 42715602
chr18 56212460 56212471 FOXP2 JASPAR yes 42715603
chr18 56212461 56212481 RREB1 JASPAR yes 42715604
chr18 56212463 56212483 RREB1 JASPAR yes 42715605
chr18 56212464 56212470 HiNF-A TRANSFAC yes 42715606
chr18 56212465 56212485 RREB1 JASPAR yes 42715607
chr18 56212467 56212487 RREB1 JASPAR yes 42715608
SNP sites on vista27611[chr18:56212323-56212488]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 56212350 rs117843961 A G
BATF NFIC
5285656
chr18 56212399 rs117042965 C T
BATF NFIC
5285657
chr18 56212464 rs538832012 A T
BATF FOXP1 FOXP2 HiNF-A IRF1 NFIC RREB1 STAT2
5285658
chr18 56212466 rs141933899 AAC A
BATF FOXP1 FOXP2 HiNF-A IRF1 NFIC RREB1 STAT2
5285659
chr18 56212466 rs398033038 AAC A
BATF FOXP1 FOXP2 HiNF-A IRF1 NFIC RREB1 STAT2
5285660
chr18 56212466 rs551006149 A C
BATF FOXP1 FOXP2 HiNF-A IRF1 NFIC RREB1 STAT2
5285661
chr18 56212466 rs749631012 AAC A
BATF FOXP1 FOXP2 HiNF-A IRF1 NFIC RREB1 STAT2
5285662
chr18 56212466 rs796125486 AAC A
BATF FOXP1 FOXP2 HiNF-A IRF1 NFIC RREB1 STAT2
5285663
Genes possibly regulated by vista27611[chr18:56212323-56212488]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 56148479 56296189 - ALPK2 ENSG00000198796.6 56296189 0.97 0.97 16612 16299
Expression level of Genes
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miRNAs possibly regulated by vista27611[chr18:56212323-56212488]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results