EnhancerDB
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  3. vista27619[chr18:56317461-56317625]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27619[chr18:56317461-56317625]
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Tissue distribution of vista27619
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Transcription factor that possibly regulate vista27619[chr18:56317461-56317625]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 56317318 56317722 RELA UCSC Txn Factor no Conserved 108338570
chr18 56317349 56317694 NFIC UCSC Txn Factor no Conserved 108338572
chr18 56317368 56317690 RUNX3 UCSC Txn Factor no Conserved 108338576
chr18 56317456 56317467 DMRT3 JASPAR yes 42715852
chr18 56317456 56317467 DMRT3 JASPAR yes 110969051
chr18 56317468 56317472 YY1 TRANSFAC yes 42715853
chr18 56317468 56317472 YY1 TRANSFAC yes 110969052
chr18 56317474 56317479 ETS2 TRANSFAC yes 42715854
chr18 56317474 56317479 ETS2 TRANSFAC yes 110969053
chr18 56317501 56317514 NFKB1 JASPAR yes 42715855
chr18 56317501 56317514 NFKB1 JASPAR yes 110969054
chr18 56317502 56317512 RELA JASPAR yes 42715856
chr18 56317502 56317512 RELA JASPAR yes 110969055
chr18 56317502 56317513 NFKB1 JASPAR yes 42715857
chr18 56317502 56317513 NFKB1 JASPAR yes 110969056
chr18 56317503 56317513 NFKB1 JASPAR yes 42715858
chr18 56317503 56317513 RELA JASPAR yes 42715859
chr18 56317503 56317513 REL JASPAR yes 42715860
chr18 56317503 56317513 NFKB1 JASPAR yes 110969057
chr18 56317503 56317513 RELA JASPAR yes 110969058
chr18 56317503 56317513 REL JASPAR yes 110969059
chr18 56317509 56317515 SP1 TRANSFAC yes 42715861
chr18 56317509 56317515 SP1 TRANSFAC yes 110969060
chr18 56317509 56317519 SP1 JASPAR yes 42715862
chr18 56317509 56317519 SP1 JASPAR yes 110969061
chr18 56317524 56317539 RUNX2 JASPAR yes 42715863
chr18 56317524 56317539 RUNX2 JASPAR yes 110969062
chr18 56317525 56317528 MYB TRANSFAC yes 42715864
chr18 56317525 56317528 MYB TRANSFAC yes 110969063
chr18 56317525 56317534 RUNX2 JASPAR yes 42715865
chr18 56317525 56317534 RUNX2 JASPAR yes 110969064
chr18 56317525 56317535 RUNX3 JASPAR yes 42715866
chr18 56317525 56317535 RUNX3 JASPAR yes 110969065
chr18 56317525 56317536 RUNX1 JASPAR yes 42715867
chr18 56317525 56317536 RUNX1 JASPAR yes 110969066
chr18 56317530 56317536 SOX10 JASPAR yes 42715868
chr18 56317530 56317536 SOX10 JASPAR yes 110969067
chr18 56317536 56317542 PEA3 TRANSFAC yes 42715869
chr18 56317536 56317542 PEA3 TRANSFAC yes 110969068
chr18 56317546 56317549 MYB TRANSFAC yes 42715870
chr18 56317546 56317549 MYB TRANSFAC yes 110969069
chr18 56317550 56317571 IRF1 JASPAR yes 42715871
chr18 56317550 56317571 IRF1 JASPAR yes 110969070
chr18 56317552 56317567 IRF9 JASPAR yes 42715872
chr18 56317552 56317567 IRF9 JASPAR yes 110969071
chr18 56317553 56317567 IRF7 JASPAR yes 42715873
chr18 56317553 56317567 IRF8 JASPAR yes 42715874
chr18 56317553 56317567 IRF7 JASPAR yes 110969072
chr18 56317553 56317567 IRF8 JASPAR yes 110969073
chr18 56317554 56317569 STAT2 JASPAR yes 42715875
chr18 56317554 56317569 STAT2 JASPAR yes 110969074
chr18 56317555 56317567 IRF1 JASPAR yes 42715876
chr18 56317555 56317567 IRF1 JASPAR yes 110969075
chr18 56317609 56317615 GATA3 JASPAR yes 42715877
chr18 56317609 56317615 GATA3 JASPAR yes 110969076
chr18 56317619 56317632 ZBTB18 JASPAR yes 42715878
chr18 56317619 56317632 ZBTB18 JASPAR yes 110969077
SNP sites on vista27619[chr18:56317461-56317625]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 56317600 rs80309047 A C
NFIC RELA RUNX3
5286790
Genes possibly regulated by vista27619[chr18:56317461-56317625]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 56148479 56296189 - ALPK2 ENSG00000198796.6 56296189 0.97 0.97 16612 78728
chr18 56338618 56417371 + MALT1 ENSG00000172175.8 56338618 0.74 1.0 16613 79007
Expression level of Genes
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miRNAs possibly regulated by vista27619[chr18:56317461-56317625]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results