EnhancerDB
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  3. vista27625[chr18:56394566-56394962]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27625[chr18:56394566-56394962]
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Tissue distribution of vista27625
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Transcription factor that possibly regulate vista27625[chr18:56394566-56394962]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 56394561 56394580 PAX5 JASPAR yes 42716112
chr18 56394561 56394580 PAX5 JASPAR yes 110972877
chr18 56394569 56394573 NFE TRANSFAC yes 42716113
chr18 56394569 56394573 NFE TRANSFAC yes 110972878
chr18 56394590 56394601 CEBPA JASPAR yes 42716114
chr18 56394590 56394601 CEBPA JASPAR yes 110972879
chr18 56394590 56394602 HLF JASPAR yes 42716115
chr18 56394590 56394602 HLF JASPAR yes 110972880
chr18 56394591 56394601 CEBPB JASPAR yes 42716116
chr18 56394591 56394601 CEBPD JASPAR yes 42716117
chr18 56394591 56394601 CEBPE JASPAR yes 42716118
chr18 56394591 56394601 CEBPG JASPAR yes 42716119
chr18 56394591 56394601 CEBPB JASPAR yes 110972881
chr18 56394591 56394601 CEBPD JASPAR yes 110972882
chr18 56394591 56394601 CEBPE JASPAR yes 110972883
chr18 56394591 56394601 CEBPG JASPAR yes 110972884
chr18 56394591 56394602 CEBPB JASPAR yes 42716120
chr18 56394591 56394602 CEBPB JASPAR yes 110972885
chr18 56394602 56394620 ESR2 JASPAR yes 42716121
chr18 56394602 56394620 ESR2 JASPAR yes 110972886
chr18 56394603 56394620 ESR1 JASPAR yes 42716122
chr18 56394603 56394620 ESR1 JASPAR yes 110972887
chr18 56394676 56394686 MAX JASPAR yes 42716123
chr18 56394676 56394686 MAX JASPAR yes 110972888
chr18 56394676 56394687 USF2 JASPAR yes 42716124
chr18 56394676 56394687 USF2 JASPAR yes 110972889
chr18 56394676 56394688 HES5 JASPAR yes 42716125
chr18 56394676 56394688 HES7 JASPAR yes 42716126
chr18 56394676 56394688 HES5 JASPAR yes 110972890
chr18 56394676 56394688 HES7 JASPAR yes 110972891
chr18 56394706 56394721 MEF2A JASPAR yes 42716127
chr18 56394706 56394721 MEF2A JASPAR yes 110972892
chr18 56394707 56394722 MEF2C JASPAR yes 42716128
chr18 56394707 56394722 MEF2C JASPAR yes 110972893
chr18 56394708 56394720 MEF2A JASPAR yes 42716129
chr18 56394708 56394720 MEF2B JASPAR yes 42716130
chr18 56394708 56394720 MEF2D JASPAR yes 42716131
chr18 56394708 56394720 MEF2A JASPAR yes 110972894
chr18 56394708 56394720 MEF2B JASPAR yes 110972895
chr18 56394708 56394720 MEF2D JASPAR yes 110972896
chr18 56394710 56394714 YY1 TRANSFAC yes 42716132
chr18 56394710 56394714 YY1 TRANSFAC yes 110972897
chr18 56394759 56394763 NFE TRANSFAC yes 42716133
chr18 56394759 56394763 NFE TRANSFAC yes 110972898
chr18 56394759 56394764 GATA1 TRANSFAC yes 42716134
chr18 56394759 56394764 GATA1 TRANSFAC yes 110972899
chr18 56394759 56394765 GATA3 JASPAR yes 42716135
chr18 56394759 56394765 GATA3 JASPAR yes 110972900
chr18 56394763 56394776 NR2F1 JASPAR yes 42716136
chr18 56394763 56394776 NR2F1 JASPAR yes 110972901
chr18 56394765 56394776 ESRRA JASPAR yes 42716137
chr18 56394765 56394776 ESRRB JASPAR yes 42716138
chr18 56394765 56394776 ESRRA JASPAR yes 110972902
chr18 56394765 56394776 ESRRB JASPAR yes 110972903
chr18 56394766 56394774 NR4A2 JASPAR yes 42716139
chr18 56394766 56394774 NR4A2 JASPAR yes 110972904
chr18 56394767 56394777 RORA JASPAR yes 42716140
chr18 56394767 56394777 RORA JASPAR yes 110972905
chr18 56394767 56394784 RARA JASPAR yes 42716141
chr18 56394767 56394784 RXRA JASPAR yes 42716142
chr18 56394767 56394784 RARA JASPAR yes 110972906
chr18 56394767 56394784 RXRA JASPAR yes 110972907
chr18 56394777 56394783 ZNF354C JASPAR yes 42716143
chr18 56394777 56394783 ZNF354C JASPAR yes 110972908
chr18 56394782 56394796 PLAG1 JASPAR yes 42716144
chr18 56394782 56394796 PLAG1 JASPAR yes 110972909
chr18 56394787 56394794 E2F1 TRANSFAC yes 42716145
chr18 56394787 56394794 E2F1 TRANSFAC yes 110972910
chr18 56394830 56394836 NFIC JASPAR yes 42716146
chr18 56394830 56394836 NFIC JASPAR yes 110972911
chr18 56394836 56394856 RREB1 JASPAR yes 42716147
chr18 56394836 56394856 RREB1 JASPAR yes 110972912
chr18 56394842 56394863 IRF1 JASPAR yes 42716148
chr18 56394842 56394863 IRF1 JASPAR yes 110972913
chr18 56394843 56394858 FOXP1 JASPAR yes 42716149
chr18 56394843 56394858 FOXP1 JASPAR yes 110972914
chr18 56394843 56394863 RREB1 JASPAR yes 42716150
chr18 56394843 56394863 RREB1 JASPAR yes 110972915
chr18 56394843 56394864 IRF1 JASPAR yes 42716151
chr18 56394843 56394864 IRF1 JASPAR yes 110972916
chr18 56394844 56394855 FOXP2 JASPAR yes 42716152
chr18 56394844 56394855 FOXP2 JASPAR yes 110972917
chr18 56394844 56394859 STAT2 JASPAR yes 42716153
chr18 56394844 56394859 STAT2 JASPAR yes 110972918
chr18 56394845 56394860 FOXP1 JASPAR yes 42716154
chr18 56394845 56394860 FOXP1 JASPAR yes 110972919
chr18 56394848 56394863 FOXP1 JASPAR yes 42716155
chr18 56394848 56394863 FOXP1 JASPAR yes 110972920
chr18 56394848 56394868 RREB1 JASPAR yes 42716156
chr18 56394848 56394868 RREB1 JASPAR yes 110972921
chr18 56394848 56394869 IRF1 JASPAR yes 42716157
chr18 56394848 56394869 IRF1 JASPAR yes 110972922
chr18 56394849 56394870 IRF1 JASPAR yes 42716158
chr18 56394849 56394870 IRF1 JASPAR yes 110972923
chr18 56394850 56394865 FOXP1 JASPAR yes 42716159
chr18 56394850 56394865 FOXP1 JASPAR yes 110972924
chr18 56394854 56394875 IRF1 JASPAR yes 42716160
chr18 56394854 56394875 IRF1 JASPAR yes 110972925
chr18 56394855 56394861 TCF4 TRANSFAC yes 42716161
chr18 56394855 56394861 TCF4 TRANSFAC yes 110972926
chr18 56394855 56394870 FOXP1 JASPAR yes 42716162
chr18 56394855 56394870 FOXP1 JASPAR yes 110972927
chr18 56394856 56394867 FOXP2 JASPAR yes 42716163
chr18 56394856 56394867 FOXP2 JASPAR yes 110972928
chr18 56394856 56394868 FOXC2 JASPAR yes 42716164
chr18 56394856 56394868 FOXC2 JASPAR yes 110972929
chr18 56394856 56394871 STAT2 JASPAR yes 42716165
chr18 56394856 56394871 STAT2 JASPAR yes 110972930
chr18 56394857 56394872 FOXP1 JASPAR yes 42716166
chr18 56394857 56394872 FOXP1 JASPAR yes 110972931
chr18 56394859 56394874 FOXP1 JASPAR yes 42716167
chr18 56394859 56394874 FOXP1 JASPAR yes 110972932
chr18 56394860 56394875 FOXP1 JASPAR yes 42716168
chr18 56394860 56394875 FOXP1 JASPAR yes 110972933
chr18 56394861 56394876 FOXP1 JASPAR yes 42716169
chr18 56394861 56394876 FOXP1 JASPAR yes 110972934
chr18 56394862 56394877 FOXP1 JASPAR yes 42716170
chr18 56394862 56394877 FOXP1 JASPAR yes 110972935
chr18 56394884 56394896 INSM1 JASPAR yes 42716171
chr18 56394884 56394896 INSM1 JASPAR yes 110972936
chr18 56394907 56394918 HOXC12 JASPAR yes 42716172
chr18 56394907 56394918 HOXC12 JASPAR yes 110972937
chr18 56394908 56394918 HOXD11 JASPAR yes 42716173
chr18 56394908 56394918 HOXD11 JASPAR yes 110972938
chr18 56394939 56394943 YY1 TRANSFAC yes 42716174
chr18 56394939 56394943 YY1 TRANSFAC yes 110972939
SNP sites on vista27625[chr18:56394566-56394962]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 56394612 rs144785485 G A
ESR1 ESR2
5287180
chr18 56394613 rs534476424 G A
ESR1 ESR2
5287181
chr18 56394670 rs148649171 G A no 5287182
chr18 56394683 rs143282859 A G
HES5 HES7 MAX USF2
5287183
chr18 56394830 rs535618540 C G
NFIC
5287184
chr18 56394849 rs111818083 T G
FOXP1 FOXP2 IRF1 RREB1 STAT2
5287185
chr18 56394850 rs572387499 T G
FOXP1 FOXP2 IRF1 RREB1 STAT2
5287186
chr18 56394860 rs74183292 GT G
FOXC2 FOXP1 FOXP2 IRF1 RREB1 STAT2 TCF4
5287187
chr18 56394888 rs546092884 C T
INSM1
5287188
Genes possibly regulated by vista27625[chr18:56394566-56394962]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 56148479 56296189 - ALPK2 ENSG00000198796.6 56296189 0.97 0.97 16612 1623
chr18 56338618 56417371 + MALT1 ENSG00000172175.8 56338618 0.74 1.0 16613 44052
Expression level of Genes
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miRNAs possibly regulated by vista27625[chr18:56394566-56394962]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results