EnhancerDB
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  3. vista27642[chr18:56701404-56701604]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27642[chr18:56701404-56701604]
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Tissue distribution of vista27642
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Transcription factor that possibly regulate vista27642[chr18:56701404-56701604]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 56701415 56701419 H1TF2 TRANSFAC yes 42716757
chr18 56701415 56701419 NFE TRANSFAC yes 42716758
chr18 56701415 56701419 SRF TRANSFAC yes 42716759
chr18 56701415 56701419 H1TF2 TRANSFAC yes 111002825
chr18 56701415 56701419 NFE TRANSFAC yes 111002826
chr18 56701415 56701419 SRF TRANSFAC yes 111002827
chr18 56701417 56701431 PAX6 JASPAR yes 42716760
chr18 56701417 56701431 PAX6 JASPAR yes 111002828
chr18 56701450 56701455 SP1 TRANSFAC yes 42716761
chr18 56701450 56701455 SP1 TRANSFAC yes 111002829
chr18 56701450 56701465 RUNX2 JASPAR yes 42716762
chr18 56701450 56701465 RUNX2 JASPAR yes 111002830
chr18 56701451 56701469 ESR1 JASPAR yes 42716763
chr18 56701451 56701469 ESR1 JASPAR yes 111002831
chr18 56701458 56701472 BATF3 JASPAR yes 42716764
chr18 56701458 56701472 BATF3 JASPAR yes 111002832
chr18 56701484 56701490 SOX10 JASPAR yes 42716765
chr18 56701484 56701490 SOX10 JASPAR yes 111002833
chr18 56701497 56701507 NFATC3 JASPAR yes 42716766
chr18 56701497 56701507 NFATC3 JASPAR yes 111002834
chr18 56701499 56701506 NFATC2 JASPAR yes 42716767
chr18 56701499 56701506 NFATC2 JASPAR yes 111002835
chr18 56701539 56701550 HOXC12 JASPAR yes 42716768
chr18 56701539 56701550 HOXC12 JASPAR yes 111002836
chr18 56701574 56701579 H4TF1 TRANSFAC yes 42716769
chr18 56701574 56701579 H4TF1 TRANSFAC yes 111002837
chr18 56701586 56701600 TLX1 JASPAR yes 42716770
chr18 56701586 56701600 TLX1 JASPAR yes 111002838
SNP sites on vista27642[chr18:56701404-56701604]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 56701478 rs559339669 C T no 5290064
chr18 56701503 rs116548390 A G
NFATC2 NFATC3
5290065
chr18 56701540 rs191515556 G T
HOXC12
5290066
chr18 56701547 rs116121219 A G
HOXC12
5290067
Genes possibly regulated by vista27642[chr18:56701404-56701604]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
Expression level of Genes
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No results
miRNAs possibly regulated by vista27642[chr18:56701404-56701604]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results