EnhancerDB
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  3. vista28086[chr19:485856-486161]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28086[chr19:485856-486161]
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Tissue distribution of vista28086
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Transcription factor that possibly regulate vista28086[chr19:485856-486161]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 485863 485873 SP1 JASPAR yes 70776042
chr19 485885 485891 MZF1 JASPAR yes 70776043
chr19 485892 485907 TFAP2A JASPAR yes 70776044
chr19 485892 485907 TFAP2C JASPAR yes 70776045
chr19 485893 485904 TFAP2A JASPAR yes 70776046
chr19 485893 485904 TFAP2B JASPAR yes 70776047
chr19 485893 485904 TFAP2C JASPAR yes 70776048
chr19 485908 485929 REST JASPAR yes 70776049
chr19 485912 485916 NFE TRANSFAC yes 70776050
chr19 485917 485923 SOX10 JASPAR yes 70776051
chr19 485919 485933 TLX1 JASPAR yes 70776052
chr19 485932 485944 INSM1 JASPAR yes 70776053
chr19 485937 485948 FOS JASPAR yes 70776054
chr19 485937 485948 FOSL1 JASPAR yes 70776055
chr19 485937 485948 JUND JASPAR yes 70776056
chr19 485938 485952 JUN JASPAR yes 70776057
chr19 485939 485950 BATF JASPAR yes 70776058
chr19 485952 485966 ZIC1 JASPAR yes 70776059
chr19 485964 485973 THAP1 JASPAR yes 70776060
chr19 485966 485973 SP1 TRANSFAC yes 70776061
chr19 485967 485974 SP1 TRANSFAC yes 70776062
chr19 485968 485973 SP1 TRANSFAC yes 70776063
chr19 485968 485974 SP1 TRANSFAC yes 70776064
chr19 485974 485980 LEF1 TRANSFAC yes 70776065
chr19 485974 485980 SOX10 JASPAR yes 70776066
chr19 485975 485990 RFX5 JASPAR yes 70776067
chr19 485978 485992 EBF1 JASPAR yes 70776068
chr19 485993 485996 MYB TRANSFAC yes 70776069
chr19 485997 486002 ETS2 TRANSFAC yes 70776070
chr19 485997 486005 EHF JASPAR yes 70776071
chr19 486011 486020 THAP1 JASPAR yes 70776072
chr19 486019 486034 AR JASPAR yes 70776073
chr19 486039 486060 ZNF263 JASPAR yes 70776074
chr19 486043 486049 SP1 TRANSFAC yes 70776075
chr19 486072 486076 NFE TRANSFAC yes 70776076
chr19 486074 486088 EBF1 JASPAR yes 70776077
chr19 486116 486125 HIC2 JASPAR yes 70776078
chr19 486119 486123 LFA1 TRANSFAC yes 70776079
chr19 486123 486133 SP1 JASPAR yes 70776080
SNP sites on vista28086[chr19:485856-486161]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 485892 rs185179351 C G
TFAP2A TFAP2C
5364213
chr19 485929 rs12611288 G A
REST TLX1
5364214
chr19 485934 rs11420300 G GC
INSM1
5364215
chr19 485953 rs10419509 C A
ZIC1
5364216
chr19 485956 rs7259304 G A
ZIC1
5364217
chr19 485957 rs7256083 C T
ZIC1
5364218
chr19 485963 rs7250605 T C
ZIC1
5364219
chr19 485971 rs112644601 G A
SP1 THAP1
5364220
chr19 485985 rs562380056 G A
EBF1 RFX5
5364221
chr19 486046 rs151311648 C T
SP1 ZNF263
5364222
chr19 486102 rs117318383 C G no 5364223
chr19 486136 rs118065625 C A no 5364224
Genes possibly regulated by vista28086[chr19:485856-486161]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 405438 409139 - C2CD4C ENSG00000183186.6 409139 0.8 1.0 16700 23283
chr19 416583 460996 - SHC2 ENSG00000129946.6 460996 0.87 1.0 16701 75140
chr19 463346 474983 - ODF3L2 ENSG00000181781.5 474983 0.86 1.0 16702 89127
chr19 489176 505347 + MADCAM1 ENSG00000099866.10 489176 0.8 0.87 16703 96985
chr19 507299 519654 + TPGS1 ENSG00000141933.8 507299 0.64 1.0 16704 78862
chr19 531714 542097 + CDC34 ENSG00000099804.4 531714 0.52 1.0 16705 54447
chr19 544034 549919 + GZMM ENSG00000197540.3 544034 0.95 1.0 16706 42127
chr19 571297 583493 + BSG ENSG00000172270.14 571297 0.64 1.0 16707 14864
Expression level of Genes
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miRNAs possibly regulated by vista28086[chr19:485856-486161]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results