EnhancerDB
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  3. vista28088[chr19:510583-510951]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28088[chr19:510583-510951]
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Tissue distribution of vista28088
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Transcription factor that possibly regulate vista28088[chr19:510583-510951]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 510458 511812 POLR2A UCSC Txn Factor no Conserved 108344254
chr19 510458 511812 POLR2A UCSC Txn Factor no Conserved 108344255
chr19 510548 511165 CTCF UCSC Txn Factor no Conserved 108344322
chr19 510576 511012 MAX UCSC Txn Factor no Conserved 108344348
chr19 510642 510906 RAD21 UCSC Txn Factor no Conserved 108344398
chr19 510774 511053 EGR1 UCSC Txn Factor no Conserved 108344461
chr19 510581 510602 ZNF263 JASPAR yes 70776144
chr19 510581 510602 ZNF263 JASPAR yes 111964291
chr19 510582 510592 MZF1 JASPAR yes 70776145
chr19 510582 510592 MZF1 JASPAR yes 111964292
chr19 510585 510591 SP1 TRANSFAC yes 70776146
chr19 510585 510591 SP1 TRANSFAC yes 111964293
chr19 510596 510607 ELF5 JASPAR yes 70776147
chr19 510596 510607 ELF5 JASPAR yes 111964294
chr19 510597 510605 EHF JASPAR yes 70776148
chr19 510597 510605 EHF JASPAR yes 111964295
chr19 510619 510630 EBF1 JASPAR yes 70776149
chr19 510619 510630 EBF1 JASPAR yes 111964296
chr19 510676 510680 LFA1 TRANSFAC yes 70776150
chr19 510676 510680 LFA1 TRANSFAC yes 111964297
chr19 510684 510704 PPARG JASPAR yes 70776151
chr19 510684 510704 PPARG JASPAR yes 111964298
chr19 510685 510703 ESR1 JASPAR yes 70776152
chr19 510685 510703 ESR2 JASPAR yes 70776153
chr19 510685 510703 ESR1 JASPAR yes 111964299
chr19 510685 510703 ESR2 JASPAR yes 111964300
chr19 510686 510704 ESR2 JASPAR yes 70776154
chr19 510686 510704 ESR2 JASPAR yes 111964301
chr19 510687 510702 ESR2 JASPAR yes 70776155
chr19 510687 510702 ESR2 JASPAR yes 111964302
chr19 510687 510707 ESR1 JASPAR yes 70776156
chr19 510687 510707 ESR1 JASPAR yes 111964303
chr19 510688 510692 ESR1 TRANSFAC yes 70776157
chr19 510688 510692 ESR1 TRANSFAC yes 111964304
chr19 510709 510722 TFAP2A JASPAR yes 70776158
chr19 510709 510722 TFAP2B JASPAR yes 70776159
chr19 510709 510722 TFAP2C JASPAR yes 70776160
chr19 510709 510722 TFAP2A JASPAR yes 111964305
chr19 510709 510722 TFAP2B JASPAR yes 111964306
chr19 510709 510722 TFAP2C JASPAR yes 111964307
chr19 510721 510736 RFX5 JASPAR yes 70776161
chr19 510721 510736 RFX5 JASPAR yes 111964308
chr19 510725 510741 GLIS1 JASPAR yes 70776162
chr19 510725 510741 GLIS1 JASPAR yes 111964309
chr19 510762 510781 CTCF JASPAR yes 70776163
chr19 510762 510781 CTCF JASPAR yes 111964310
chr19 510764 510770 NFE2 TRANSFAC yes 70776164
chr19 510764 510770 NFE2 TRANSFAC yes 111964311
chr19 510765 510779 ZIC1 JASPAR yes 70776165
chr19 510765 510779 ZIC1 JASPAR yes 111964312
chr19 510765 510780 ZIC3 JASPAR yes 70776166
chr19 510765 510780 ZIC4 JASPAR yes 70776167
chr19 510765 510780 ZIC3 JASPAR yes 111964313
chr19 510765 510780 ZIC4 JASPAR yes 111964314
chr19 510776 510780 ESR1 TRANSFAC yes 70776168
chr19 510776 510780 ESR1 TRANSFAC yes 111964315
chr19 510779 510794 STAT1 JASPAR yes 70776169
chr19 510779 510794 STAT1 JASPAR yes 111964316
chr19 510781 510792 STAT1 JASPAR yes 70776170
chr19 510781 510792 STAT3 JASPAR yes 70776171
chr19 510781 510792 STAT1 JASPAR yes 111964317
chr19 510781 510792 STAT3 JASPAR yes 111964318
chr19 510798 510812 IRF7 JASPAR yes 70776172
chr19 510798 510812 IRF8 JASPAR yes 70776173
chr19 510798 510812 IRF7 JASPAR yes 111964319
chr19 510798 510812 IRF8 JASPAR yes 111964320
chr19 510799 510813 STAT1 JASPAR yes 70776174
chr19 510799 510813 STAT1 JASPAR yes 111964321
chr19 510810 510822 NHLH1 JASPAR yes 70776175
chr19 510810 510822 NHLH1 JASPAR yes 111964322
chr19 510811 510821 TFAP4 JASPAR yes 70776176
chr19 510811 510821 TFAP4 JASPAR yes 111964323
chr19 510821 510841 PPARG JASPAR yes 70776177
chr19 510821 510841 PPARG JASPAR yes 111964324
chr19 510846 510857 EBF1 JASPAR yes 70776178
chr19 510846 510857 EBF1 JASPAR yes 111964325
chr19 510852 510857 SP1 TRANSFAC yes 70776179
chr19 510852 510857 SP1 TRANSFAC yes 111964326
chr19 510852 510873 REST JASPAR yes 70776180
chr19 510852 510873 REST JASPAR yes 111964327
chr19 510853 510872 REST JASPAR yes 70776181
chr19 510853 510872 REST JASPAR yes 111964328
chr19 510869 510890 REST JASPAR yes 70776182
chr19 510869 510890 REST JASPAR yes 111964329
chr19 510906 510923 BCL6B JASPAR yes 70776183
chr19 510906 510923 BCL6B JASPAR yes 111964330
chr19 510914 510925 NFKB1 JASPAR yes 70776184
chr19 510914 510925 NFKB1 JASPAR yes 111964331
chr19 510932 510944 ZBTB7A JASPAR yes 70776185
chr19 510932 510944 ZBTB7A JASPAR yes 111964332
chr19 510933 510948 RUNX2 JASPAR yes 70776186
chr19 510933 510948 RUNX2 JASPAR yes 111964333
chr19 510934 510944 RUNX3 JASPAR yes 70776187
chr19 510934 510944 RUNX3 JASPAR yes 111964334
chr19 510934 510945 RUNX1 JASPAR yes 70776188
chr19 510934 510945 RUNX1 JASPAR yes 111964335
SNP sites on vista28088[chr19:510583-510951]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 510622 rs79435700 C G
CTCF EBF1 MAX POLR2A
5364548
chr19 510675 rs76963284 G A
CTCF MAX POLR2A RAD21
5364549
chr19 510698 rs553284267 GCC G
CTCF ESR1 ESR2 MAX POLR2A PPARG RAD21
5364550
chr19 510703 rs115432011 A G
CTCF ESR1 ESR2 MAX POLR2A PPARG RAD21
5364551
chr19 510716 rs146539977 G A
CTCF MAX POLR2A RAD21 TFAP2A TFAP2B TFAP2C
5364552
chr19 510731 rs73919612 C G
CTCF GLIS1 MAX POLR2A RAD21 RFX5
5364553
chr19 510806 rs554765595 CGAA C
CTCF EGR1 IRF7 IRF8 MAX POLR2A RAD21 STAT1
5364554
chr19 510818 rs57235370 T C
CTCF EGR1 MAX NHLH1 POLR2A RAD21 TFAP4
5364555
chr19 510845 rs187216534 G C
CTCF EGR1 MAX POLR2A RAD21
5364556
chr19 510885 rs116617193 A G
CTCF EGR1 MAX POLR2A RAD21 REST
5364557
chr19 510908 rs117421532 C A
BCL6B CTCF EGR1 MAX POLR2A
5364558
chr19 510926 rs141319490 G A
CTCF EGR1 MAX POLR2A
5364559
Genes possibly regulated by vista28088[chr19:510583-510951]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 416583 460996 - SHC2 ENSG00000129946.6 460996 0.87 1.0 16701 50413
chr19 463346 474983 - ODF3L2 ENSG00000181781.5 474983 0.86 1.0 16702 64400
chr19 489176 505347 + MADCAM1 ENSG00000099866.10 489176 0.8 0.87 16703 78593
chr19 507299 519654 + TPGS1 ENSG00000141933.8 507299 0.64 1.0 16704 96716
chr19 531714 542097 + CDC34 ENSG00000099804.4 531714 0.52 1.0 16705 79237
chr19 544034 549919 + GZMM ENSG00000197540.3 544034 0.95 1.0 16706 66917
chr19 571297 583493 + BSG ENSG00000172270.14 571297 0.64 1.0 16707 39654
chr19 589893 617159 + HCN2 ENSG00000099822.2 589893 0.94 0.98 16708 21058
Expression level of Genes
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miRNAs possibly regulated by vista28088[chr19:510583-510951]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results