EnhancerDB
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  3. vista28104[chr19:752652-753043]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28104[chr19:752652-753043]
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Tissue distribution of vista28104
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Transcription factor that possibly regulate vista28104[chr19:752652-753043]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 752459 753254 POLR2A UCSC Txn Factor no Conserved 108346065
chr19 752459 753254 POLR2A UCSC Txn Factor no Conserved 108346066
chr19 752489 753438 EP300 UCSC Txn Factor no Conserved 108346092
chr19 752489 753438 EP300 UCSC Txn Factor no Conserved 108346093
chr19 752494 753352 TCF12 UCSC Txn Factor no Conserved 108346099
chr19 752494 753352 TCF12 UCSC Txn Factor no Conserved 108346100
chr19 752663 752963 NR3C1 UCSC Txn Factor no Conserved 108346272
chr19 752666 753339 TFAP2C UCSC Txn Factor no Conserved 108346277
chr19 752666 753339 TFAP2C UCSC Txn Factor no Conserved 108346278
chr19 752686 753363 TFAP2A UCSC Txn Factor no Conserved 108346290
chr19 752686 753363 TFAP2A UCSC Txn Factor no Conserved 108346291
chr19 752691 752913 FOXA1 UCSC Txn Factor no Conserved 108346294
chr19 752694 752917 FOXA2 UCSC Txn Factor no Conserved 108346298
chr19 752642 752663 ZNF263 JASPAR yes 70777020
chr19 752642 752663 ZNF263 JASPAR yes 111973537
chr19 752644 752656 TEAD1 JASPAR yes 70777021
chr19 752644 752656 TEAD1 JASPAR yes 111973538
chr19 752645 752666 ZNF263 JASPAR yes 70777022
chr19 752645 752666 ZNF263 JASPAR yes 111973540
chr19 752678 752684 MZF1 JASPAR yes 70777023
chr19 752678 752684 MZF1 JASPAR yes 111973541
chr19 752678 752698 RREB1 JASPAR yes 70777024
chr19 752678 752698 RREB1 JASPAR yes 111973542
chr19 752679 752699 RREB1 JASPAR yes 70777025
chr19 752679 752699 RREB1 JASPAR yes 111973543
chr19 752683 752693 SP1 JASPAR yes 70777026
chr19 752683 752693 SP1 JASPAR yes 111973544
chr19 752691 752703 GLI2 JASPAR yes 70777027
chr19 752691 752703 GLI2 JASPAR yes 111973545
chr19 752693 752707 GLIS3 JASPAR yes 70777028
chr19 752693 752707 GLIS3 JASPAR yes 111973546
chr19 752711 752721 ID4 JASPAR yes 70777029
chr19 752711 752721 TCF3 JASPAR yes 70777030
chr19 752711 752721 TCF4 JASPAR yes 70777031
chr19 752711 752721 ID4 JASPAR yes 111973547
chr19 752711 752721 TCF3 JASPAR yes 111973548
chr19 752711 752721 TCF4 JASPAR yes 111973549
chr19 752712 752721 SNAI2 JASPAR yes 70777032
chr19 752712 752721 SNAI2 JASPAR yes 111973550
chr19 752713 752718 USF2 TRANSFAC yes 70777033
chr19 752713 752718 USF2 TRANSFAC yes 111973551
chr19 752728 752733 SP1 TRANSFAC yes 70777034
chr19 752728 752733 SP1 TRANSFAC yes 111973552
chr19 752756 752761 ATF1 TRANSFAC yes 70777035
chr19 752756 752761 ATF1 TRANSFAC yes 111973553
chr19 752756 752764 CREB1 JASPAR yes 70777036
chr19 752756 752764 CREB1 JASPAR yes 111973554
chr19 752773 752777 TEAD2 TRANSFAC yes 70777037
chr19 752773 752777 TEAD2 TRANSFAC yes 111973555
chr19 752773 752778 TBP TRANSFAC yes 70777038
chr19 752773 752778 TBP TRANSFAC yes 111973556
chr19 752773 752779 TMF TRANSFAC yes 70777039
chr19 752773 752779 TMF TRANSFAC yes 111973557
chr19 752775 752789 ZIC1 JASPAR yes 70777040
chr19 752775 752789 ZIC1 JASPAR yes 111973558
chr19 752775 752790 ZIC3 JASPAR yes 70777041
chr19 752775 752790 ZIC3 JASPAR yes 111973559
chr19 752796 752800 NFE TRANSFAC yes 70777042
chr19 752796 752800 NFE TRANSFAC yes 111973560
chr19 752807 752818 FOXA1 JASPAR yes 70777043
chr19 752807 752818 FOXA1 JASPAR yes 111973561
chr19 752807 752822 FOXA1 JASPAR yes 70777044
chr19 752807 752822 FOXA1 JASPAR yes 111973562
chr19 752809 752813 LFA1 TRANSFAC yes 70777045
chr19 752809 752813 LFA1 TRANSFAC yes 111973563
chr19 752814 752824 TEAD1 JASPAR yes 70777046
chr19 752814 752824 TEAD4 JASPAR yes 70777047
chr19 752814 752824 TEAD1 JASPAR yes 111973564
chr19 752814 752824 TEAD4 JASPAR yes 111973565
chr19 752815 752823 TEAD3 JASPAR yes 70777048
chr19 752815 752823 TEAD3 JASPAR yes 111973566
chr19 752827 752832 SP1 TRANSFAC yes 70777049
chr19 752827 752832 SP1 TRANSFAC yes 111973567
chr19 752831 752845 EBF1 JASPAR yes 70777050
chr19 752831 752845 EBF1 JASPAR yes 111973568
chr19 752838 752849 NFKB1 JASPAR yes 70777051
chr19 752838 752849 NFKB1 JASPAR yes 111973569
chr19 752871 752886 TFAP2C JASPAR yes 70777052
chr19 752871 752886 TFAP2C JASPAR yes 111973570
chr19 752909 752917 TEAD3 JASPAR yes 70777053
chr19 752909 752917 TEAD3 JASPAR yes 111973571
chr19 752940 752952 NHLH1 JASPAR yes 70777054
chr19 752940 752952 NHLH1 JASPAR yes 111973572
chr19 752941 752951 NHLH1 JASPAR yes 70777055
chr19 752941 752951 NHLH1 JASPAR yes 111973573
chr19 752955 752970 FOXA1 JASPAR yes 70777056
chr19 752955 752970 FOXA1 JASPAR yes 111973574
chr19 752959 752970 FOXA1 JASPAR yes 70777057
chr19 752959 752970 FOXA1 JASPAR yes 111973575
chr19 752974 752978 YY1 TRANSFAC yes 70777058
chr19 752974 752978 YY1 TRANSFAC yes 111973576
chr19 752974 752984 HOXA13 JASPAR yes 70777059
chr19 752974 752984 HOXB13 JASPAR yes 70777060
chr19 752974 752984 HOXD13 JASPAR yes 70777061
chr19 752974 752984 HOXA13 JASPAR yes 111973577
chr19 752974 752984 HOXB13 JASPAR yes 111973578
chr19 752974 752984 HOXD13 JASPAR yes 111973579
chr19 753012 753023 FLI1 JASPAR yes 70777062
chr19 753012 753023 FLI1 JASPAR yes 111973580
chr19 753013 753021 EHF JASPAR yes 70777063
chr19 753013 753021 EHF JASPAR yes 111973581
chr19 753024 753039 HNF4A JASPAR yes 70777064
chr19 753024 753039 HNF4A JASPAR yes 111973582
SNP sites on vista28104[chr19:752652-753043]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 752712 rs559217689 G A
EP300 FOXA1 FOXA2 ID4 NR3C1 POLR2A SNAI2 TCF12 TCF3 TCF4 TFAP2A TFAP2C
5367090
chr19 752787 rs111376580 G T
EP300 FOXA1 FOXA2 NR3C1 POLR2A TCF12 TFAP2A TFAP2C ZIC1 ZIC3
5367091
chr19 752878 rs11882442 T C
EP300 FOXA1 FOXA2 NR3C1 POLR2A TCF12 TFAP2A TFAP2C
5367092
chr19 752895 rs112121955 C T
EP300 FOXA1 FOXA2 NR3C1 POLR2A TCF12 TFAP2A TFAP2C
5367093
chr19 752917 rs57576586 G A
EP300 FOXA2 NR3C1 POLR2A TCF12 TEAD3 TFAP2A TFAP2C
5367094
chr19 752920 rs143858677 A G
EP300 NR3C1 POLR2A TCF12 TFAP2A TFAP2C
5367095
chr19 752987 rs115154199 G A
EP300 POLR2A TCF12 TFAP2A TFAP2C
5367096
Genes possibly regulated by vista28104[chr19:752652-753043]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 647526 663277 - RNF126 ENSG00000070423.13 663277 0.58 1.0 16711 10625
chr19 676392 683385 + FSTL3 ENSG00000070404.5 676392 0.76 0.99 16712 23740
chr19 685521 695460 - PRSS57 ENSG00000185198.7 695460 0.97 0.99 16713 42808
chr19 708953 748329 + PALM ENSG00000099864.13 708953 0.78 1.0 16714 56301
chr19 751126 764319 + MISP ENSG00000099812.6 751126 0.95 1.0 16715 98474
chr19 797075 812327 + PTBP1 ENSG00000011304.12 797075 0.67 1.0 16716 55968
chr19 812518 821967 - LPPR3 ENSG00000129951.14 821967 0.95 0.95 16717 31076
chr19 825097 832017 + AZU1 ENSG00000172232.5 825097 0.94 0.92 16718 27946
chr19 840963 848175 + PRTN3 ENSG00000196415.5 840963 0.94 1.0 16719 12080
chr19 851014 856242 + ELANE ENSG00000197561.2 851014 0.92 0.0 16720 2029
Expression level of Genes
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miRNAs possibly regulated by vista28104[chr19:752652-753043]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr19 804977 804999 + hsa-miR-4745-3p MIMAT0019879 797451 0.0006730380939561179 0.868225 0.0 795
Expression level of miRNAs
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