EnhancerDB
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  3. vista28117[chr19:908605-908810]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28117[chr19:908605-908810]
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Tissue distribution of vista28117
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Transcription factor that possibly regulate vista28117[chr19:908605-908810]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 908705 909005 EGR1 UCSC Txn Factor no Conserved 108347598
chr19 908605 908626 IRF1 JASPAR yes 70777553
chr19 908605 908626 IRF1 JASPAR yes 111982335
chr19 908607 908619 FOXC2 JASPAR yes 70777554
chr19 908607 908619 FOXC2 JASPAR yes 111982336
chr19 908608 908622 IRF7 JASPAR yes 70777555
chr19 908608 908622 IRF7 JASPAR yes 111982337
chr19 908610 908622 IRF1 JASPAR yes 70777556
chr19 908610 908622 IRF1 JASPAR yes 111982338
chr19 908611 908626 FOXP1 JASPAR yes 70777557
chr19 908611 908626 MEF2C JASPAR yes 70777558
chr19 908611 908626 FOXP1 JASPAR yes 111982339
chr19 908611 908626 MEF2C JASPAR yes 111982340
chr19 908611 908632 IRF1 JASPAR yes 70777559
chr19 908611 908632 IRF1 JASPAR yes 111982341
chr19 908612 908627 MEF2A JASPAR yes 70777560
chr19 908612 908627 MEF2A JASPAR yes 111982342
chr19 908613 908625 FOXC2 JASPAR yes 70777561
chr19 908613 908625 MEF2A JASPAR yes 70777562
chr19 908613 908625 MEF2B JASPAR yes 70777563
chr19 908613 908625 MEF2D JASPAR yes 70777564
chr19 908613 908625 FOXC2 JASPAR yes 111982343
chr19 908613 908625 MEF2A JASPAR yes 111982344
chr19 908613 908625 MEF2B JASPAR yes 111982345
chr19 908613 908625 MEF2D JASPAR yes 111982346
chr19 908614 908624 MEF2A JASPAR yes 70777565
chr19 908614 908624 MEF2A JASPAR yes 111982347
chr19 908617 908638 IRF1 JASPAR yes 70777566
chr19 908617 908638 IRF1 JASPAR yes 111982348
chr19 908620 908635 FOXP1 JASPAR yes 70777567
chr19 908620 908635 FOXP1 JASPAR yes 111982349
chr19 908623 908644 IRF1 JASPAR yes 70777568
chr19 908623 908644 IRF1 JASPAR yes 111982350
chr19 908626 908632 TBP TRANSFAC yes 70777569
chr19 908626 908632 TBP TRANSFAC yes 111982351
chr19 908627 908642 FOXP1 JASPAR yes 70777570
chr19 908627 908642 FOXP1 JASPAR yes 111982352
chr19 908633 908639 TBP TRANSFAC yes 70777571
chr19 908633 908639 TBP TRANSFAC yes 111982353
chr19 908649 908664 RUNX2 JASPAR yes 70777572
chr19 908649 908664 RUNX2 JASPAR yes 111982354
chr19 908660 908666 SP1 TRANSFAC yes 70777573
chr19 908660 908666 SP1 TRANSFAC yes 111982355
chr19 908660 908670 SP1 JASPAR yes 70777574
chr19 908660 908670 SP1 JASPAR yes 111982356
chr19 908708 908718 ID4 JASPAR yes 70777575
chr19 908708 908718 TCF3 JASPAR yes 70777576
chr19 908708 908718 TCF4 JASPAR yes 70777577
chr19 908708 908718 ID4 JASPAR yes 111982357
chr19 908708 908718 TCF3 JASPAR yes 111982358
chr19 908708 908718 TCF4 JASPAR yes 111982359
chr19 908709 908718 SNAI2 JASPAR yes 70777578
chr19 908709 908718 SNAI2 JASPAR yes 111982360
chr19 908709 908729 TP63 JASPAR yes 70777579
chr19 908709 908729 TP63 JASPAR yes 111982361
chr19 908710 908715 USF2 TRANSFAC yes 70777580
chr19 908710 908715 USF2 TRANSFAC yes 111982362
chr19 908744 908756 INSM1 JASPAR yes 70777581
chr19 908744 908756 INSM1 JASPAR yes 111982363
chr19 908744 908758 GLIS2 JASPAR yes 70777582
chr19 908744 908758 GLIS2 JASPAR yes 111982364
chr19 908758 908767 SP1 TRANSFAC yes 70777583
chr19 908758 908767 SP1 TRANSFAC yes 111982365
chr19 908759 908765 SP1 TRANSFAC yes 70777584
chr19 908759 908765 SP1 TRANSFAC yes 111982366
chr19 908759 908769 SP1 JASPAR yes 70777585
chr19 908759 908769 SP1 JASPAR yes 111982367
chr19 908760 908767 SP1 TRANSFAC yes 70777586
chr19 908760 908767 SP1 TRANSFAC yes 111982368
chr19 908761 908766 SP1 TRANSFAC yes 70777587
chr19 908761 908766 SP1 TRANSFAC yes 111982369
chr19 908761 908767 SP1 TRANSFAC yes 70777588
chr19 908761 908767 SP1 TRANSFAC yes 111982370
chr19 908761 908768 SP1 TRANSFAC yes 70777589
chr19 908761 908768 SP1 TRANSFAC yes 111982371
chr19 908762 908772 ZNF740 JASPAR yes 70777590
chr19 908762 908772 ZNF740 JASPAR yes 111982372
chr19 908762 908776 GLIS2 JASPAR yes 70777591
chr19 908762 908776 GLIS3 JASPAR yes 70777592
chr19 908762 908776 GLIS2 JASPAR yes 111982373
chr19 908762 908776 GLIS3 JASPAR yes 111982374
chr19 908788 908800 EHF JASPAR yes 70777593
chr19 908788 908800 ELF1 JASPAR yes 70777594
chr19 908788 908800 ELF4 JASPAR yes 70777595
chr19 908788 908800 EHF JASPAR yes 111982375
chr19 908788 908800 ELF1 JASPAR yes 111982376
chr19 908788 908800 ELF4 JASPAR yes 111982377
chr19 908788 908801 ELF3 JASPAR yes 70777596
chr19 908788 908801 ELF3 JASPAR yes 111982378
chr19 908789 908800 ELF5 JASPAR yes 70777597
chr19 908789 908800 ELF5 JASPAR yes 111982379
chr19 908790 908797 ETS1 TRANSFAC yes 70777598
chr19 908790 908797 ETS1 TRANSFAC yes 111982380
chr19 908792 908807 HSF1 JASPAR yes 70777599
chr19 908792 908807 HSF1 JASPAR yes 111982381
chr19 908793 908809 RFX4 JASPAR yes 70777600
chr19 908793 908809 RFX4 JASPAR yes 111982382
chr19 908808 908828 TP63 JASPAR yes 70777601
chr19 908808 908828 TP63 JASPAR yes 111982383
SNP sites on vista28117[chr19:908605-908810]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 908648 rs11880936 G A no 5369214
chr19 908718 rs575533928 T C
EGR1 ID4 SNAI2 TCF3 TCF4 TP63
5369215
chr19 908764 rs543447697 G A
EGR1 GLIS2 GLIS3 SP1 ZNF740
5369216
chr19 908778 rs369710956 C G
EGR1
5369217
Genes possibly regulated by vista28117[chr19:908605-908810]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 812518 821967 - LPPR3 ENSG00000129951.14 821967 0.95 0.95 16717 13362
chr19 825097 832017 + AZU1 ENSG00000172232.5 825097 0.94 0.92 16718 16492
chr19 840963 848175 + PRTN3 ENSG00000196415.5 840963 0.94 1.0 16719 32358
chr19 851014 856242 + ELANE ENSG00000197561.2 851014 0.92 0.0 16720 42409
chr19 859453 863453 + CFD ENSG00000197766.3 859453 0.92 1.0 16721 50848
chr19 867962 893218 - MED16 ENSG00000175221.10 893218 0.58 1.0 16722 84613
chr19 896503 913240 - R3HDM4 ENSG00000198858.5 913240 0.74 1.0 16723 95570
chr19 917287 921015 + KISS1R ENSG00000116014.5 917287 0.93 1.0 16724 91523
chr19 925781 975939 + ARID3A ENSG00000116017.6 925781 0.81 1.0 16725 83029
chr19 983174 994569 + WDR18 ENSG00000065268.6 983174 0.85 1.0 16726 25636
chr19 999601 999952 + AC004528.1 ENSG00000269169.1 999601 0.0 0.0 16727 9209
chr19 1000418 1009731 + GRIN3B ENSG00000116032.5 1000418 0.81 1.0 16728 8392
Expression level of Genes
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miRNAs possibly regulated by vista28117[chr19:908605-908810]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results