EnhancerDB
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  3. vista28125[chr19:953220-953565]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28125[chr19:953220-953565]
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Tissue distribution of vista28125
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Transcription factor that possibly regulate vista28125[chr19:953220-953565]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 953237 953249 IRF1 JASPAR yes 70778071
chr19 953237 953249 IRF1 JASPAR yes 111986730
chr19 953238 953242 NFE TRANSFAC yes 70778072
chr19 953238 953242 NFE TRANSFAC yes 111986731
chr19 953252 953262 SP1 JASPAR yes 70778073
chr19 953252 953262 SP1 JASPAR yes 111986732
chr19 953253 953263 SP1 JASPAR yes 70778074
chr19 953253 953263 SP1 JASPAR yes 111986733
chr19 953255 953260 SP1 TRANSFAC yes 70778075
chr19 953255 953260 SP1 TRANSFAC yes 111986734
chr19 953288 953306 NR3C1 JASPAR yes 70778076
chr19 953288 953306 NR3C1 JASPAR yes 111986735
chr19 953295 953306 FLI1 JASPAR yes 70778077
chr19 953295 953306 FLI1 JASPAR yes 111986736
chr19 953296 953306 ERF JASPAR yes 70778078
chr19 953296 953306 ERG JASPAR yes 70778079
chr19 953296 953306 ETS1 JASPAR yes 70778080
chr19 953296 953306 FLI1 JASPAR yes 70778081
chr19 953296 953306 ERF JASPAR yes 111986737
chr19 953296 953306 ERG JASPAR yes 111986738
chr19 953296 953306 ETS1 JASPAR yes 111986739
chr19 953296 953306 FLI1 JASPAR yes 111986740
chr19 953296 953307 ELF5 JASPAR yes 70778082
chr19 953296 953307 ETV2 JASPAR yes 70778083
chr19 953296 953307 ELF5 JASPAR yes 111986741
chr19 953296 953307 ETV2 JASPAR yes 111986742
chr19 953296 953308 EHF JASPAR yes 70778084
chr19 953296 953308 ELF1 JASPAR yes 70778085
chr19 953296 953308 EHF JASPAR yes 111986743
chr19 953296 953308 ELF1 JASPAR yes 111986744
chr19 953296 953309 ELF1 JASPAR yes 70778086
chr19 953296 953309 ELF1 JASPAR yes 111986745
chr19 953297 953305 FEV JASPAR yes 70778087
chr19 953297 953305 FEV JASPAR yes 111986746
chr19 953299 953314 FOXA1 JASPAR yes 70778088
chr19 953299 953314 FOXA1 JASPAR yes 111986747
chr19 953303 953314 FOXA1 JASPAR yes 70778089
chr19 953303 953314 FOXA1 JASPAR yes 111986748
chr19 953328 953342 GATA2 JASPAR yes 70778090
chr19 953328 953342 GATA2 JASPAR yes 111986749
chr19 953332 953347 JUND JASPAR yes 70778091
chr19 953332 953347 JUND JASPAR yes 111986750
chr19 953335 953356 ZNF263 JASPAR yes 70778092
chr19 953335 953356 ZNF263 JASPAR yes 111986751
chr19 953339 953354 PRDM1 JASPAR yes 70778093
chr19 953339 953354 PRDM1 JASPAR yes 111986752
chr19 953340 953361 ZNF263 JASPAR yes 70778094
chr19 953340 953361 ZNF263 JASPAR yes 111986753
chr19 953343 953364 ZNF263 JASPAR yes 70778095
chr19 953343 953364 ZNF263 JASPAR yes 111986754
chr19 953351 953357 SP1 TRANSFAC yes 70778096
chr19 953351 953357 SP1 TRANSFAC yes 111986755
chr19 953351 953361 SP1 JASPAR yes 70778097
chr19 953351 953361 SP1 JASPAR yes 111986756
chr19 953352 953373 ZNF263 JASPAR yes 70778098
chr19 953352 953373 ZNF263 JASPAR yes 111986757
chr19 953353 953363 ZNF740 JASPAR yes 70778099
chr19 953353 953363 ZNF740 JASPAR yes 111986758
chr19 953368 953388 RREB1 JASPAR yes 70778100
chr19 953368 953388 RREB1 JASPAR yes 111986759
chr19 953380 953386 SP1 TRANSFAC yes 70778101
chr19 953380 953386 SP1 TRANSFAC yes 111986760
chr19 953399 953408 SNAI2 JASPAR yes 70778102
chr19 953399 953408 SNAI2 JASPAR yes 111986761
chr19 953399 953409 ID4 JASPAR yes 70778103
chr19 953399 953409 TCF3 JASPAR yes 70778104
chr19 953399 953409 TCF4 JASPAR yes 70778105
chr19 953399 953409 ID4 JASPAR yes 111986762
chr19 953399 953409 TCF3 JASPAR yes 111986763
chr19 953399 953409 TCF4 JASPAR yes 111986764
chr19 953408 953414 SP1 TRANSFAC yes 70778106
chr19 953408 953414 SP1 TRANSFAC yes 111986765
chr19 953409 953420 EBF1 JASPAR yes 70778107
chr19 953409 953420 EBF1 JASPAR yes 111986766
chr19 953418 953423 SP1 TRANSFAC yes 70778108
chr19 953418 953423 SP1 TRANSFAC yes 111986767
chr19 953425 953429 H4TF2 TRANSFAC yes 70778109
chr19 953425 953429 H4TF2 TRANSFAC yes 111986768
chr19 953430 953449 CTCF JASPAR yes 70778110
chr19 953430 953449 CTCF JASPAR yes 111986769
chr19 953434 953443 ZEB1 JASPAR yes 70778111
chr19 953434 953443 ZEB1 JASPAR yes 111986770
chr19 953436 953441 SP1 TRANSFAC yes 70778112
chr19 953436 953441 SP1 TRANSFAC yes 111986771
chr19 953439 953446 SP1 TRANSFAC yes 70778113
chr19 953439 953446 SP1 TRANSFAC yes 111986772
chr19 953440 953449 SP1 TRANSFAC yes 70778114
chr19 953440 953449 SP1 TRANSFAC yes 111986773
chr19 953441 953446 SP1 TRANSFAC yes 70778115
chr19 953441 953446 SP1 TRANSFAC yes 111986774
chr19 953446 953466 RREB1 JASPAR yes 70778116
chr19 953446 953466 RREB1 JASPAR yes 111986775
chr19 953449 953470 ZNF263 JASPAR yes 70778117
chr19 953449 953470 ZNF263 JASPAR yes 111986776
chr19 953450 953471 ZNF263 JASPAR yes 70778118
chr19 953450 953471 ZNF263 JASPAR yes 111986777
chr19 953452 953462 SP1 JASPAR yes 70778119
chr19 953452 953462 SP1 JASPAR yes 111986778
chr19 953453 953463 ZNF740 JASPAR yes 70778120
chr19 953453 953463 ZNF740 JASPAR yes 111986779
chr19 953454 953469 TFAP2A JASPAR yes 70778121
chr19 953454 953469 TFAP2C JASPAR yes 70778122
chr19 953454 953469 TFAP2A JASPAR yes 111986780
chr19 953454 953469 TFAP2C JASPAR yes 111986781
chr19 953455 953465 ZNF740 JASPAR yes 70778123
chr19 953455 953465 ZNF740 JASPAR yes 111986782
chr19 953455 953468 TFAP2B JASPAR yes 70778124
chr19 953455 953468 TFAP2B JASPAR yes 111986783
chr19 953456 953468 TFAP2A JASPAR yes 70778125
chr19 953456 953468 TFAP2A JASPAR yes 111986784
chr19 953456 953470 PLAG1 JASPAR yes 70778126
chr19 953456 953470 PLAG1 JASPAR yes 111986785
chr19 953457 953468 TFAP2A JASPAR yes 70778127
chr19 953457 953468 TFAP2A JASPAR yes 111986786
chr19 953457 953471 PLAG1 JASPAR yes 70778128
chr19 953457 953471 PLAG1 JASPAR yes 111986787
chr19 953458 953467 TFAP2A JASPAR yes 70778129
chr19 953458 953467 TFAP2A JASPAR yes 111986788
chr19 953465 953485 RREB1 JASPAR yes 70778130
chr19 953465 953485 RREB1 JASPAR yes 111986789
chr19 953468 953482 PLAG1 JASPAR yes 70778131
chr19 953468 953482 PLAG1 JASPAR yes 111986790
chr19 953472 953482 SP1 JASPAR yes 70778132
chr19 953472 953482 ZNF740 JASPAR yes 70778133
chr19 953472 953482 SP1 JASPAR yes 111986791
chr19 953472 953482 ZNF740 JASPAR yes 111986792
chr19 953473 953483 ZNF740 JASPAR yes 70778134
chr19 953473 953483 ZNF740 JASPAR yes 111986793
chr19 953473 953487 ZIC1 JASPAR yes 70778135
chr19 953473 953487 ZIC1 JASPAR yes 111986794
chr19 953473 953488 ZIC3 JASPAR yes 70778136
chr19 953473 953488 ZIC4 JASPAR yes 70778137
chr19 953473 953488 ZIC3 JASPAR yes 111986795
chr19 953473 953488 ZIC4 JASPAR yes 111986796
chr19 953474 953484 SP1 JASPAR yes 70778138
chr19 953474 953484 ZNF740 JASPAR yes 70778139
chr19 953474 953484 SP1 JASPAR yes 111986797
chr19 953474 953484 ZNF740 JASPAR yes 111986798
chr19 953475 953485 SP1 JASPAR yes 70778140
chr19 953475 953485 ZNF740 JASPAR yes 70778141
chr19 953475 953485 SP1 JASPAR yes 111986799
chr19 953475 953485 ZNF740 JASPAR yes 111986800
chr19 953476 953486 ZNF740 JASPAR yes 70778142
chr19 953476 953486 ZNF740 JASPAR yes 111986801
chr19 953476 953490 GLIS2 JASPAR yes 70778143
chr19 953476 953490 GLIS2 JASPAR yes 111986802
chr19 953504 953519 NR2C2 JASPAR yes 70778144
chr19 953504 953519 NR2C2 JASPAR yes 111986803
chr19 953512 953517 SP1 TRANSFAC yes 70778145
chr19 953512 953517 SP1 TRANSFAC yes 111986804
chr19 953524 953535 E2F6 JASPAR yes 70778146
chr19 953524 953535 E2F6 JASPAR yes 111986805
chr19 953526 953542 ZNF143 JASPAR yes 70778147
chr19 953526 953542 ZNF143 JASPAR yes 111986806
chr19 953534 953545 EBF1 JASPAR yes 70778148
chr19 953534 953545 EBF1 JASPAR yes 111986807
chr19 953535 953541 MZF1 JASPAR yes 70778149
chr19 953535 953541 MZF1 JASPAR yes 111986808
SNP sites on vista28125[chr19:953220-953565]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 953243 rs376595684 C T
IRF1
5370009
chr19 953262 rs78135107 G T
SP1
5370010
chr19 953358 rs565341663 C T
SP1 ZNF263 ZNF740
5370011
chr19 953416 rs191070318 A G
EBF1
5370012
chr19 953462 rs557876572 C A
PLAG1 RREB1 SP1 TFAP2A TFAP2B TFAP2C ZNF263 ZNF740
5370013
chr19 953475 rs3837991 A ACC
PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370014
chr19 953475 rs537478762 AC A
PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370015
chr19 953475 rs556026394 A ACC
PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370016
chr19 953475 rs78483470 AC A
PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370017
chr19 953478 rs528581173 C G,T
GLIS2 PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370018
chr19 953479 rs540268184 C A,G,T
GLIS2 PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370019
chr19 953480 rs139895513 C CCT
GLIS2 PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370020
chr19 953480 rs555624721 C A,G,T
GLIS2 PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370021
chr19 953482 rs182341180 C A,G,T
GLIS2 PLAG1 RREB1 SP1 ZIC1 ZIC3 ZIC4 ZNF740
5370022
Genes possibly regulated by vista28125[chr19:953220-953565]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 859453 863453 + CFD ENSG00000197766.3 859453 0.92 1.0 16721 6233
chr19 867962 893218 - MED16 ENSG00000175221.10 893218 0.58 1.0 16722 39998
chr19 896503 913240 - R3HDM4 ENSG00000198858.5 913240 0.74 1.0 16723 60020
chr19 917287 921015 + KISS1R ENSG00000116014.5 917287 0.93 1.0 16724 64067
chr19 925781 975939 + ARID3A ENSG00000116017.6 925781 0.81 1.0 16725 72561
chr19 983174 994569 + WDR18 ENSG00000065268.6 983174 0.85 1.0 16726 70391
chr19 999601 999952 + AC004528.1 ENSG00000269169.1 999601 0.0 0.0 16727 53964
chr19 1000418 1009731 + GRIN3B ENSG00000116032.5 1000418 0.81 1.0 16728 53147
chr19 1009647 1021117 - TMEM259 ENSG00000182087.8 1021117 0.65 1.0 16729 32448
chr19 1026298 1039068 + CNN2 ENSG00000064666.10 1026298 0.77 1.0 16730 27267
chr19 1040102 1065571 + ABCA7 ENSG00000064687.8 1040102 0.85 1.0 16731 13463
Expression level of Genes
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miRNAs possibly regulated by vista28125[chr19:953220-953565]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results