EnhancerDB
  1. Home
  2. Enhancers
  3. vista28162[chr19:1408835-1409120]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28162[chr19:1408835-1409120]
Back to top
Tissue distribution of vista28162
Back to top
Transcription factor that possibly regulate vista28162[chr19:1408835-1409120]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 1406771 1410663 POLR2A UCSC Txn Factor no Conserved 108353531
chr19 1406771 1410663 POLR2A UCSC Txn Factor no Conserved 108353532
chr19 1406771 1410663 POLR2A UCSC Txn Factor no Conserved 108353533
chr19 1408852 1408864 TEAD1 JASPAR yes 70780298
chr19 1408852 1408864 TEAD1 JASPAR yes 112013324
chr19 1408855 1408868 ELF3 JASPAR yes 70780299
chr19 1408855 1408868 ELF3 JASPAR yes 112013325
chr19 1408858 1408864 ETS1 JASPAR yes 70780300
chr19 1408858 1408864 SPI1 JASPAR yes 70780301
chr19 1408858 1408864 ETS1 JASPAR yes 112013326
chr19 1408858 1408864 SPI1 JASPAR yes 112013327
chr19 1408858 1408868 ELK1 JASPAR yes 70780302
chr19 1408858 1408868 ELK1 JASPAR yes 112013328
chr19 1408858 1408870 E2F8 JASPAR yes 70780303
chr19 1408858 1408870 E2F8 JASPAR yes 112013329
chr19 1408879 1408889 RELA JASPAR yes 70780304
chr19 1408879 1408889 RELA JASPAR yes 112013330
chr19 1408984 1409003 RFX2 JASPAR yes 70780305
chr19 1408984 1409003 RFX2 JASPAR yes 112013331
chr19 1408988 1409004 RFX5 JASPAR yes 70780306
chr19 1408988 1409004 RFX5 JASPAR yes 112013332
chr19 1408995 1409001 NFIC JASPAR yes 70780307
chr19 1408995 1409001 NFIC JASPAR yes 112013333
chr19 1409015 1409030 SCRT1 JASPAR yes 70780308
chr19 1409015 1409030 SCRT1 JASPAR yes 112013334
chr19 1409023 1409027 ESR1 TRANSFAC yes 70780309
chr19 1409023 1409027 ESR1 TRANSFAC yes 112013335
chr19 1409025 1409033 MGA JASPAR yes 70780310
chr19 1409025 1409033 TBX15 JASPAR yes 70780311
chr19 1409025 1409033 TBX1 JASPAR yes 70780312
chr19 1409025 1409033 TBX4 JASPAR yes 70780313
chr19 1409025 1409033 TBX5 JASPAR yes 70780314
chr19 1409025 1409033 MGA JASPAR yes 112013336
chr19 1409025 1409033 TBX15 JASPAR yes 112013337
chr19 1409025 1409033 TBX1 JASPAR yes 112013338
chr19 1409025 1409033 TBX4 JASPAR yes 112013339
chr19 1409025 1409033 TBX5 JASPAR yes 112013340
chr19 1409025 1409040 SCRT1 JASPAR yes 70780315
chr19 1409025 1409040 SCRT1 JASPAR yes 112013341
chr19 1409027 1409040 SCRT2 JASPAR yes 70780316
chr19 1409027 1409040 SCRT2 JASPAR yes 112013342
chr19 1409033 1409039 ZNF354C JASPAR yes 70780317
chr19 1409033 1409039 ZNF354C JASPAR yes 112013343
chr19 1409035 1409045 MZF1 JASPAR yes 70780318
chr19 1409035 1409045 MZF1 JASPAR yes 112013344
chr19 1409039 1409050 NFKB1 JASPAR yes 70780319
chr19 1409039 1409050 NFKB1 JASPAR yes 112013345
chr19 1409047 1409059 SRF JASPAR yes 70780320
chr19 1409047 1409059 SRF JASPAR yes 112013346
chr19 1409060 1409070 MZF1 JASPAR yes 70780321
chr19 1409060 1409070 MZF1 JASPAR yes 112013347
chr19 1409062 1409072 SP1 JASPAR yes 70780322
chr19 1409062 1409072 SP1 JASPAR yes 112013348
chr19 1409063 1409069 SP1 TRANSFAC yes 70780323
chr19 1409063 1409069 SP1 TRANSFAC yes 112013349
chr19 1409063 1409073 SP1 JASPAR yes 70780324
chr19 1409063 1409073 SP1 JASPAR yes 112013350
chr19 1409067 1409073 MZF1 JASPAR yes 70780325
chr19 1409067 1409073 MZF1 JASPAR yes 112013351
chr19 1409070 1409085 FOXP1 JASPAR yes 70780326
chr19 1409070 1409085 FOXP1 JASPAR yes 112013352
chr19 1409075 1409087 IRF1 JASPAR yes 70780327
chr19 1409075 1409087 IRF1 JASPAR yes 112013353
chr19 1409089 1409099 GABPA JASPAR yes 70780328
chr19 1409089 1409099 GABPA JASPAR yes 112013354
chr19 1409091 1409097 ETS1 JASPAR yes 70780329
chr19 1409091 1409097 SPI1 JASPAR yes 70780330
chr19 1409091 1409097 ETS1 JASPAR yes 112013355
chr19 1409091 1409097 SPI1 JASPAR yes 112013356
chr19 1409106 1409120 TCF7L2 JASPAR yes 70780331
chr19 1409106 1409120 TCF7L2 JASPAR yes 112013357
chr19 1409106 1409121 LEF1 JASPAR yes 70780332
chr19 1409106 1409121 LEF1 JASPAR yes 112013358
chr19 1409110 1409116 TCF4 TRANSFAC yes 70780333
chr19 1409110 1409116 TCF4 TRANSFAC yes 112013359
chr19 1409115 1409124 NKX3-2 JASPAR yes 70780334
chr19 1409115 1409124 NKX3-2 JASPAR yes 112013360
chr19 1409116 1409124 ISL2 JASPAR yes 70780335
chr19 1409116 1409124 ISL2 JASPAR yes 112013361
SNP sites on vista28162[chr19:1408835-1409120]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 1408889 rs7251282 C T
POLR2A RELA
5375417
chr19 1408897 rs75050858 C G
POLR2A
5375418
chr19 1408904 rs7251833 A G
POLR2A
5375419
chr19 1408905 rs181392562 A C,G
POLR2A
5375420
chr19 1409002 rs374433843 G A
POLR2A RFX2 RFX5
5375421
Genes possibly regulated by vista28162[chr19:1408835-1409120]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 1383526 1395583 + NDUFS7 ENSG00000115286.15 1383526 0.8 1.0 16744 74691
chr19 1397091 1401569 - GAMT ENSG00000130005.7 1401569 0.95 1.0 16745 92734
chr19 1407568 1435719 + DAZAP1 ENSG00000071626.12 1407568 0.68 1.0 16746 98733
chr19 1438358 1440583 + RPS15 ENSG00000115268.5 1438358 0.65 1.0 16747 70762
chr19 1440838 1441937 + AC027307.3 ENSG00000268798.1 1440838 0.73 1.0 16748 68282
chr19 1446300 1473243 + APC2 ENSG00000115266.7 1446300 0.82 1.0 16749 62820
chr19 1461142 1479555 - C19orf25 ENSG00000119559.11 1479555 0.73 1.0 16750 29565
chr19 1481427 1490751 - PCSK4 ENSG00000115257.11 1490751 0.8 1.0 16751 18369
chr19 1491165 1497926 + REEP6 ENSG00000115255.6 1491165 0.98 1.0 16752 17955
Expression level of Genes
Back to top
miRNAs possibly regulated by vista28162[chr19:1408835-1409120]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results