EnhancerDB
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  3. vista28207[chr19:2171641-2172019]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28207[chr19:2171641-2172019]
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Tissue distribution of vista28207
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Transcription factor that possibly regulate vista28207[chr19:2171641-2172019]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 2171232 2171812 CTCF UCSC Txn Factor no Conserved 108359148
chr19 2171232 2171812 CTCF UCSC Txn Factor no Conserved 108359149
chr19 2171262 2171682 RELA UCSC Txn Factor no Conserved 108359165
chr19 2171262 2171682 RELA UCSC Txn Factor no Conserved 108359166
chr19 2171264 2171706 EBF1 UCSC Txn Factor no Conserved 108359167
chr19 2171264 2171706 EBF1 UCSC Txn Factor no Conserved 108359168
chr19 2171295 2171715 RUNX3 UCSC Txn Factor no Conserved 108359201
chr19 2171295 2171715 RUNX3 UCSC Txn Factor no Conserved 108359202
chr19 2171306 2171647 ATF2 UCSC Txn Factor no Conserved 108359212
chr19 2171306 2171647 ATF2 UCSC Txn Factor no Conserved 108359213
chr19 2171799 2172155 RCOR1 UCSC Txn Factor no Conserved 108359353
chr19 2171838 2172142 GATA2 UCSC Txn Factor no Conserved 108359363
chr19 2171857 2172181 EP300 UCSC Txn Factor no Conserved 108359367
chr19 2171871 2172124 TEAD4 UCSC Txn Factor no Conserved 108359369
chr19 2171878 2172113 TAL1 UCSC Txn Factor no Conserved 108359373
chr19 2171896 2172093 NR2F2 UCSC Txn Factor no Conserved 108359378
chr19 2171952 2172168 EBF1 UCSC Txn Factor no Conserved 108359385
chr19 2171649 2171660 EBF1 JASPAR yes 70782625
chr19 2171649 2171660 EBF1 JASPAR yes 112053537
chr19 2171664 2171685 IRF1 JASPAR yes 70782626
chr19 2171664 2171685 IRF1 JASPAR yes 112053538
chr19 2171666 2171681 STAT2 JASPAR yes 70782627
chr19 2171666 2171681 STAT2 JASPAR yes 112053539
chr19 2171668 2171680 IRF1 JASPAR yes 70782628
chr19 2171668 2171680 IRF1 JASPAR yes 112053540
chr19 2171673 2171677 YY1 TRANSFAC yes 70782629
chr19 2171673 2171677 YY1 TRANSFAC yes 112053541
chr19 2171674 2171682 FEV JASPAR yes 70782630
chr19 2171674 2171682 FEV JASPAR yes 112053542
chr19 2171681 2171697 ZNF143 JASPAR yes 70782631
chr19 2171681 2171697 ZNF143 JASPAR yes 112053543
chr19 2171691 2171708 PAX9 JASPAR yes 70782632
chr19 2171691 2171708 PAX9 JASPAR yes 112053544
chr19 2171712 2171733 REST JASPAR yes 70782633
chr19 2171712 2171733 REST JASPAR yes 112053545
chr19 2171746 2171756 SP1 JASPAR yes 70782634
chr19 2171746 2171756 SP1 JASPAR yes 112053546
chr19 2171747 2171753 SP1 TRANSFAC yes 70782635
chr19 2171747 2171753 SP1 TRANSFAC yes 112053547
chr19 2171747 2171757 SP1 JASPAR yes 70782636
chr19 2171747 2171757 SP1 JASPAR yes 112053548
chr19 2171747 2171761 ZIC1 JASPAR yes 70782637
chr19 2171747 2171761 ZIC1 JASPAR yes 112053549
chr19 2171747 2171762 ZIC4 JASPAR yes 70782638
chr19 2171747 2171762 ZIC4 JASPAR yes 112053550
chr19 2171749 2171754 SP1 TRANSFAC yes 70782639
chr19 2171749 2171754 SP1 TRANSFAC yes 112053551
chr19 2171751 2171766 AR JASPAR yes 70782640
chr19 2171751 2171766 AR JASPAR yes 112053552
chr19 2171760 2171775 TFAP2A JASPAR yes 70782641
chr19 2171760 2171775 TFAP2A JASPAR yes 112053553
chr19 2171761 2171772 EBF1 JASPAR yes 70782642
chr19 2171761 2171772 EBF1 JASPAR yes 112053554
chr19 2171761 2171774 TFAP2A JASPAR yes 70782643
chr19 2171761 2171774 TFAP2B JASPAR yes 70782644
chr19 2171761 2171774 TFAP2C JASPAR yes 70782645
chr19 2171761 2171774 TFAP2A JASPAR yes 112053555
chr19 2171761 2171774 TFAP2B JASPAR yes 112053556
chr19 2171761 2171774 TFAP2C JASPAR yes 112053557
chr19 2171762 2171777 TFAP2C JASPAR yes 70782646
chr19 2171762 2171777 TFAP2C JASPAR yes 112053558
chr19 2171770 2171775 ETS2 TRANSFAC yes 70782647
chr19 2171770 2171775 ETS2 TRANSFAC yes 112053559
chr19 2171803 2171814 FOXH1 JASPAR yes 70782648
chr19 2171803 2171814 FOXH1 JASPAR yes 112053560
chr19 2171807 2171811 YY1 TRANSFAC yes 70782649
chr19 2171807 2171811 YY1 TRANSFAC yes 112053561
chr19 2171833 2171844 EBF1 JASPAR yes 70782650
chr19 2171833 2171844 EBF1 JASPAR yes 112053562
chr19 2171849 2171858 NKX2-8 JASPAR yes 70782651
chr19 2171849 2171858 NKX2-8 JASPAR yes 112053563
chr19 2171849 2171859 NKX2-3 JASPAR yes 70782652
chr19 2171849 2171859 NKX2-3 JASPAR yes 112053564
chr19 2171879 2171888 NKX2-8 JASPAR yes 70782653
chr19 2171879 2171888 NKX2-8 JASPAR yes 112053565
chr19 2171879 2171889 NKX2-3 JASPAR yes 70782654
chr19 2171879 2171889 NKX2-3 JASPAR yes 112053566
chr19 2171886 2171896 NFKB1 JASPAR yes 70782655
chr19 2171886 2171896 NFKB1 JASPAR yes 112053567
chr19 2171887 2171904 BCL6B JASPAR yes 70782656
chr19 2171887 2171904 BCL6B JASPAR yes 112053568
chr19 2171890 2171901 STAT1 JASPAR yes 70782657
chr19 2171890 2171901 STAT1 JASPAR yes 112053569
chr19 2171908 2171913 SP1 TRANSFAC yes 70782658
chr19 2171908 2171913 SP1 TRANSFAC yes 112053570
chr19 2171912 2171925 POU2F2 JASPAR yes 70782659
chr19 2171912 2171925 POU2F2 JASPAR yes 112053571
chr19 2171954 2171967 ELF3 JASPAR yes 70782660
chr19 2171954 2171967 ELF3 JASPAR yes 112053572
chr19 2171955 2171966 ELF5 JASPAR yes 70782661
chr19 2171955 2171966 ELF5 JASPAR yes 112053573
chr19 2171955 2171967 EHF JASPAR yes 70782662
chr19 2171955 2171967 ELF4 JASPAR yes 70782663
chr19 2171955 2171967 EHF JASPAR yes 112053574
chr19 2171955 2171967 ELF4 JASPAR yes 112053575
chr19 2171956 2171964 EHF JASPAR yes 70782664
chr19 2171956 2171964 EHF JASPAR yes 112053576
chr19 2171964 2171969 GATA1 TRANSFAC yes 70782665
chr19 2171964 2171969 GATA1 TRANSFAC yes 112053577
chr19 2171988 2171995 GATA3 TRANSFAC yes 70782666
chr19 2171988 2171995 GATA3 TRANSFAC yes 112053578
chr19 2171988 2171996 GATA5 JASPAR yes 70782667
chr19 2171988 2171996 GATA5 JASPAR yes 112053579
chr19 2171990 2172002 TAL1 JASPAR yes 70782668
chr19 2171990 2172002 TAL1 JASPAR yes 112053580
chr19 2171991 2171994 MYB TRANSFAC yes 70782669
chr19 2171991 2171994 MYB TRANSFAC yes 112053581
chr19 2171992 2172002 NEUROG2 JASPAR yes 70782670
chr19 2171992 2172002 OLIG1 JASPAR yes 70782671
chr19 2171992 2172002 OLIG3 JASPAR yes 70782672
chr19 2171992 2172002 NEUROG2 JASPAR yes 112053582
chr19 2171992 2172002 OLIG1 JASPAR yes 112053583
chr19 2171992 2172002 OLIG3 JASPAR yes 112053584
chr19 2171992 2172004 TAL1 JASPAR yes 70782673
chr19 2171992 2172004 TAL1 JASPAR yes 112053585
chr19 2171999 2172003 ESR1 TRANSFAC yes 70782674
chr19 2171999 2172003 ESR1 TRANSFAC yes 112053586
chr19 2172006 2172021 FOXA1 JASPAR yes 70782675
chr19 2172006 2172021 FOXA1 JASPAR yes 112053587
chr19 2172016 2172030 GATA2 JASPAR yes 70782676
chr19 2172016 2172030 GATA2 JASPAR yes 112053588
SNP sites on vista28207[chr19:2171641-2172019]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 2171685 rs80086439 T G
CTCF EBF1 IRF1 RUNX3 ZNF143
5381966
chr19 2171750 rs545066203 C T
CTCF SP1 ZIC1 ZIC4
5381967
chr19 2171762 rs548943482 TC T
AR CTCF EBF1 TFAP2A TFAP2B TFAP2C ZIC4
5381968
chr19 2171825 rs73514432 C G,T
RCOR1
5381969
chr19 2171871 rs139132024 C T
EP300 GATA2 RCOR1 TEAD4
5381970
chr19 2171876 rs117811814 C T
EP300 GATA2 RCOR1 TEAD4
5381971
chr19 2171985 rs539438223 G A,T
EBF1 EP300 GATA2 NR2F2 RCOR1 TAL1 TEAD4
5381972
chr19 2171995 rs145250472 C T
EBF1 EP300 GATA2 GATA3 GATA5 NEUROG2 NR2F2 OLIG1 OLIG3 RCOR1 TAL1 TEAD4
5381973
Genes possibly regulated by vista28207[chr19:2171641-2172019]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 2071037 2096672 - MOB3A ENSG00000172081.9 2096672 0.72 1.0 16770 25031
chr19 2096380 2099592 + IZUMO4 ENSG00000099840.9 2096380 0.82 1.0 16771 24739
chr19 2100988 2164464 - AP3D1 ENSG00000065000.11 2164464 0.64 1.0 16772 92823
chr19 2164148 2232577 + DOT1L ENSG00000104885.13 2164148 0.75 1.0 16773 92507
chr19 2230002 2237703 - PLEKHJ1 ENSG00000104886.5 2237703 0.61 1.0 16774 34316
chr19 2236520 2248678 + SF3A2 ENSG00000104897.5 2236520 0.74 1.0 16775 35499
chr19 2249308 2252072 + AMH ENSG00000104899.4 2249308 0.78 1.0 16776 22711
chr19 2252251 2269758 - JSRP1 ENSG00000167476.6 2269758 0.94 1.0 16777 2261
chr19 2269485 2273487 + OAZ1 ENSG00000104904.8 2269485 0.56 1.0 16778 2534
Expression level of Genes
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miRNAs possibly regulated by vista28207[chr19:2171641-2172019]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results