EnhancerDB
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  3. vista28220[chr19:2478921-2479315]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28220[chr19:2478921-2479315]
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Tissue distribution of vista28220
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Transcription factor that possibly regulate vista28220[chr19:2478921-2479315]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 2475847 2480514 POLR2A UCSC Txn Factor no Conserved 108360214
chr19 2479097 2479603 RELA UCSC Txn Factor no Conserved 108360357
chr19 2478921 2478941 TP63 JASPAR yes 70783215
chr19 2478972 2478985 NFKB1 JASPAR yes 70783216
chr19 2478978 2478990 INSM1 JASPAR yes 70783217
chr19 2478981 2478991 SP1 JASPAR yes 70783218
chr19 2478984 2478990 NFE2 TRANSFAC yes 70783219
chr19 2478985 2478996 TFAP2A JASPAR yes 70783220
chr19 2478985 2478996 TFAP2B JASPAR yes 70783221
chr19 2478985 2478996 TFAP2C JASPAR yes 70783222
chr19 2478986 2478995 TFAP2A JASPAR yes 70783223
chr19 2479011 2479021 GABPA JASPAR yes 70783224
chr19 2479013 2479019 ETS1 JASPAR yes 70783225
chr19 2479013 2479019 SPI1 JASPAR yes 70783226
chr19 2479032 2479043 E2F4 JASPAR yes 70783227
chr19 2479032 2479043 E2F6 JASPAR yes 70783228
chr19 2479033 2479044 E2F1 JASPAR yes 70783229
chr19 2479036 2479043 SP1 TRANSFAC yes 70783230
chr19 2479037 2479042 SP1 TRANSFAC yes 70783231
chr19 2479037 2479043 SP1 TRANSFAC yes 70783232
chr19 2479051 2479063 GLI2 JASPAR yes 70783233
chr19 2479059 2479066 SP1 TRANSFAC yes 70783234
chr19 2479061 2479066 SP1 TRANSFAC yes 70783235
chr19 2479093 2479108 NR2C2 JASPAR yes 70783236
chr19 2479094 2479115 ZNF263 JASPAR yes 70783237
chr19 2479108 2479120 INSM1 JASPAR yes 70783238
chr19 2479115 2479130 RFX5 JASPAR yes 70783239
chr19 2479126 2479136 MZF1 JASPAR yes 70783240
chr19 2479130 2479151 ZNF263 JASPAR yes 70783241
chr19 2479132 2479153 ZNF263 JASPAR yes 70783242
chr19 2479133 2479153 RREB1 JASPAR yes 70783243
chr19 2479136 2479146 ZNF740 JASPAR yes 70783244
chr19 2479137 2479142 TFAP2A TRANSFAC yes 70783245
chr19 2479137 2479143 MZF1 JASPAR yes 70783246
chr19 2479137 2479147 SP1 JASPAR yes 70783247
chr19 2479138 2479148 SP1 JASPAR yes 70783248
chr19 2479138 2479158 RREB1 JASPAR yes 70783249
chr19 2479139 2479145 MAZ TRANSFAC yes 70783250
chr19 2479141 2479151 ZNF740 JASPAR yes 70783251
chr19 2479141 2479155 PLAG1 JASPAR yes 70783252
chr19 2479143 2479153 SP1 JASPAR yes 70783253
chr19 2479144 2479154 SP1 JASPAR yes 70783254
chr19 2479146 2479151 SP1 TRANSFAC yes 70783255
chr19 2479148 2479160 ZBTB7B JASPAR yes 70783256
chr19 2479148 2479160 ZBTB7C JASPAR yes 70783257
chr19 2479154 2479158 H4TF2 TRANSFAC yes 70783258
chr19 2479157 2479172 TFAP2C JASPAR yes 70783259
chr19 2479158 2479167 THAP1 JASPAR yes 70783260
chr19 2479158 2479169 GCM1 JASPAR yes 70783261
chr19 2479159 2479171 INSM1 JASPAR yes 70783262
chr19 2479159 2479171 TFAP2A JASPAR yes 70783263
chr19 2479159 2479171 TFAP2B JASPAR yes 70783264
chr19 2479159 2479171 TFAP2C JASPAR yes 70783265
chr19 2479159 2479174 TFAP2A JASPAR yes 70783266
chr19 2479189 2479199 TFE3 JASPAR yes 70783267
chr19 2479190 2479200 MAX JASPAR yes 70783268
chr19 2479191 2479196 MYC TRANSFAC yes 70783269
chr19 2479191 2479196 USF1 TRANSFAC yes 70783270
chr19 2479191 2479196 USF2 TRANSFAC yes 70783271
chr19 2479191 2479198 USF1 JASPAR yes 70783272
chr19 2479205 2479216 NFKB1 JASPAR yes 70783273
chr19 2479206 2479216 NFKB1 JASPAR yes 70783274
chr19 2479206 2479216 RELA JASPAR yes 70783275
chr19 2479206 2479216 REL JASPAR yes 70783276
chr19 2479242 2479255 NFKB1 JASPAR yes 70783277
chr19 2479242 2479255 NFKB2 JASPAR yes 70783278
chr19 2479243 2479254 NFKB1 JASPAR yes 70783279
chr19 2479244 2479254 NFKB1 JASPAR yes 70783280
chr19 2479244 2479255 NFKB1 JASPAR yes 70783281
chr19 2479257 2479267 SP1 JASPAR yes 70783282
chr19 2479257 2479278 ZNF263 JASPAR yes 70783283
chr19 2479258 2479279 ZNF263 JASPAR yes 70783284
chr19 2479259 2479265 MAZ TRANSFAC yes 70783285
chr19 2479259 2479270 E2F6 JASPAR yes 70783286
chr19 2479260 2479281 ZNF263 JASPAR yes 70783287
chr19 2479261 2479282 ZNF263 JASPAR yes 70783288
chr19 2479263 2479284 ZNF263 JASPAR yes 70783289
chr19 2479264 2479285 ZNF263 JASPAR yes 70783290
chr19 2479265 2479286 ZNF263 JASPAR yes 70783291
chr19 2479267 2479288 ZNF263 JASPAR yes 70783292
chr19 2479273 2479283 SP1 JASPAR yes 70783293
chr19 2479276 2479286 MZF1 JASPAR yes 70783294
chr19 2479279 2479292 NFKB1 JASPAR yes 70783295
chr19 2479279 2479292 NFKB2 JASPAR yes 70783296
chr19 2479280 2479291 NFKB1 JASPAR yes 70783297
chr19 2479281 2479286 ETS2 TRANSFAC yes 70783298
chr19 2479281 2479291 NFKB1 JASPAR yes 70783299
chr19 2479281 2479291 RELA JASPAR yes 70783300
chr19 2479281 2479292 NFKB1 JASPAR yes 70783301
chr19 2479292 2479313 ZNF263 JASPAR yes 70783302
chr19 2479294 2479315 ZNF263 JASPAR yes 70783303
chr19 2479302 2479312 SP1 JASPAR yes 70783304
chr19 2479303 2479312 SP1 TRANSFAC yes 70783305
chr19 2479304 2479310 MAZ TRANSFAC yes 70783306
chr19 2479305 2479315 MZF1 JASPAR yes 70783307
SNP sites on vista28220[chr19:2478921-2479315]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 2478991 rs564208935 C T
POLR2A SP1 TFAP2A TFAP2B TFAP2C
5384566
chr19 2479095 rs184794340 C T
NR2C2 POLR2A ZNF263
5384567
chr19 2479184 rs189268550 C G
POLR2A RELA
5384568
Genes possibly regulated by vista28220[chr19:2478921-2479315]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 2389769 2426237 + TMPRSS9 ENSG00000178297.8 2389769 0.87 1.0 16782 10848
chr19 2425622 2427892 - TIMM13 ENSG00000099800.3 2427892 0.71 1.0 16783 48971
chr19 2427636 2456994 - LMNB2 ENSG00000176619.6 2456994 0.77 1.0 16784 78073
chr19 2476120 2478257 + GADD45B ENSG00000099860.4 2476120 0.77 1.0 16785 97199
Expression level of Genes
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miRNAs possibly regulated by vista28220[chr19:2478921-2479315]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results