EnhancerDB
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  3. vista28268[chr19:3133345-3133760]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28268[chr19:3133345-3133760]
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Tissue distribution of vista28268
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Transcription factor that possibly regulate vista28268[chr19:3133345-3133760]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 3133327 3133691 EBF1 UCSC Txn Factor no Conserved 108365227
chr19 3133336 3133663 RUNX3 UCSC Txn Factor no Conserved 108365232
chr19 3133388 3133619 TCF12 UCSC Txn Factor no Conserved 108365246
chr19 3133426 3133626 BATF UCSC Txn Factor no Conserved 108365256
chr19 3133363 3133377 RORA JASPAR yes 70785581
chr19 3133364 3133374 RORA JASPAR yes 70785582
chr19 3133369 3133373 YY1 TRANSFAC yes 70785583
chr19 3133388 3133392 NFE TRANSFAC yes 70785584
chr19 3133393 3133411 ESR1 JASPAR yes 70785585
chr19 3133396 3133401 SP1 TRANSFAC yes 70785586
chr19 3133398 3133411 NFKB2 JASPAR yes 70785587
chr19 3133399 3133409 NFKB1 JASPAR yes 70785588
chr19 3133399 3133410 NFKB1 JASPAR yes 70785589
chr19 3133403 3133409 NFE2 TRANSFAC yes 70785590
chr19 3133419 3133423 NFE TRANSFAC yes 70785591
chr19 3133420 3133425 GATA2 JASPAR yes 70785592
chr19 3133420 3133427 GATA1 TRANSFAC yes 70785593
chr19 3133420 3133430 TFCP2 JASPAR yes 70785594
chr19 3133420 3133439 CTCF JASPAR yes 70785595
chr19 3133429 3133436 SP1 TRANSFAC yes 70785596
chr19 3133429 3133439 SP1 JASPAR yes 70785597
chr19 3133430 3133441 E2F1 JASPAR yes 70785598
chr19 3133431 3133436 SP1 TRANSFAC yes 70785599
chr19 3133431 3133442 E2F4 JASPAR yes 70785600
chr19 3133431 3133442 E2F6 JASPAR yes 70785601
chr19 3133432 3133437 SP1 TRANSFAC yes 70785602
chr19 3133435 3133440 ETS2 TRANSFAC yes 70785603
chr19 3133436 3133456 RREB1 JASPAR yes 70785604
chr19 3133440 3133445 SP1 TRANSFAC yes 70785605
chr19 3133445 3133455 SP1 JASPAR yes 70785606
chr19 3133452 3133457 SP1 TRANSFAC yes 70785607
chr19 3133455 3133459 LFA1 TRANSFAC yes 70785608
chr19 3133460 3133466 YY1 JASPAR yes 70785609
chr19 3133462 3133474 HES7 JASPAR yes 70785610
chr19 3133462 3133474 PKNOX1 JASPAR yes 70785611
chr19 3133462 3133474 PKNOX2 JASPAR yes 70785612
chr19 3133462 3133474 TGIF1 JASPAR yes 70785613
chr19 3133462 3133474 TGIF2 JASPAR yes 70785614
chr19 3133463 3133473 HEY2 JASPAR yes 70785615
chr19 3133463 3133473 ID4 JASPAR yes 70785616
chr19 3133463 3133473 TCF4 JASPAR yes 70785617
chr19 3133464 3133473 SNAI2 JASPAR yes 70785618
chr19 3133465 3133470 USF2 TRANSFAC yes 70785619
chr19 3133481 3133500 CTCF JASPAR yes 70785620
chr19 3133491 3133496 SP1 TRANSFAC yes 70785621
chr19 3133498 3133502 NFE TRANSFAC yes 70785622
chr19 3133508 3133520 PKNOX2 JASPAR yes 70785623
chr19 3133514 3133518 NFE TRANSFAC yes 70785624
chr19 3133516 3133532 POU4F2 JASPAR yes 70785625
chr19 3133516 3133532 POU4F3 JASPAR yes 70785626
chr19 3133523 3133534 BATF JASPAR yes 70785627
chr19 3133526 3133537 FOXH1 JASPAR yes 70785628
chr19 3133527 3133533 JUN TRANSFAC yes 70785629
chr19 3133544 3133553 RUNX2 JASPAR yes 70785630
chr19 3133547 3133563 T JASPAR yes 70785631
chr19 3133552 3133570 MAFF JASPAR yes 70785632
chr19 3133554 3133565 NRL JASPAR yes 70785633
chr19 3133554 3133569 MAFK JASPAR yes 70785634
chr19 3133575 3133581 ATF1 TRANSFAC yes 70785635
chr19 3133575 3133587 CREB1 JASPAR yes 70785636
chr19 3133581 3133591 MYF6 JASPAR yes 70785637
chr19 3133585 3133593 MEIS2 JASPAR yes 70785638
chr19 3133585 3133593 MEIS3 JASPAR yes 70785639
chr19 3133586 3133590 NFE TRANSFAC yes 70785640
chr19 3133609 3133630 ZNF263 JASPAR yes 70785641
chr19 3133612 3133622 SP1 JASPAR yes 70785642
chr19 3133615 3133620 SP1 TRANSFAC yes 70785643
chr19 3133617 3133622 TFAP2A TRANSFAC yes 70785644
chr19 3133617 3133623 MZF1 JASPAR yes 70785645
chr19 3133630 3133636 NFIC JASPAR yes 70785646
chr19 3133632 3133636 H1TF2 TRANSFAC yes 70785647
chr19 3133632 3133636 NFE TRANSFAC yes 70785648
chr19 3133632 3133636 SRF TRANSFAC yes 70785649
chr19 3133644 3133656 TFAP2C JASPAR yes 70785650
chr19 3133644 3133659 TFAP2A JASPAR yes 70785651
chr19 3133646 3133655 TFAP2A JASPAR yes 70785652
chr19 3133651 3133655 LFA1 TRANSFAC yes 70785653
chr19 3133664 3133679 AR JASPAR yes 70785654
chr19 3133683 3133687 NFE TRANSFAC yes 70785655
chr19 3133683 3133688 GATA1 TRANSFAC yes 70785656
chr19 3133683 3133689 GATA3 JASPAR yes 70785657
chr19 3133693 3133708 HNF4G JASPAR yes 70785658
chr19 3133694 3133709 HNF4A JASPAR yes 70785659
chr19 3133720 3133734 XBP1 JASPAR yes 70785660
chr19 3133728 3133733 GATA1 TRANSFAC yes 70785661
chr19 3133731 3133742 EBF1 JASPAR yes 70785662
chr19 3133736 3133741 TFAP2A TRANSFAC yes 70785663
chr19 3133736 3133742 MZF1 JASPAR yes 70785664
SNP sites on vista28268[chr19:3133345-3133760]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 3133406 rs1388481 G A
EBF1 ESR1 NFE2 NFKB1 NFKB2 RUNX3 TCF12
5391761
chr19 3133428 rs115775862 T A
BATF CTCF EBF1 RUNX3 TCF12 TFCP2
5391762
chr19 3133494 rs558716811 G A
BATF CTCF EBF1 RUNX3 SP1 TCF12
5391763
chr19 3133521 rs184990635 T G
BATF EBF1 POU4F2 POU4F3 RUNX3 TCF12
5391764
chr19 3133714 rs184558713 G A no 5391765
Genes possibly regulated by vista28268[chr19:3133345-3133760]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 2997636 3047633 - TLE2 ENSG00000065717.10 3047633 0.79 1.0 16798 14288
chr19 3052908 3063105 - AES ENSG00000104964.10 3063105 0.68 1.0 16799 29760
chr19 3094408 3124002 + GNA11 ENSG00000088256.4 3094408 0.65 1.0 16800 61063
chr19 3136191 3163767 + GNA15 ENSG00000060558.3 3136191 0.88 1.0 16801 97569
chr19 3172344 3180329 + S1PR4 ENSG00000125910.4 3172344 0.92 0.97 16802 61416
chr19 3185561 3209573 + NCLN ENSG00000125912.6 3185561 0.65 1.0 16803 48199
chr19 3224701 3297074 + CELF5 ENSG00000161082.8 3224701 0.97 1.0 16804 9059
Expression level of Genes
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miRNAs possibly regulated by vista28268[chr19:3133345-3133760]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results