EnhancerDB
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  3. vista28276[chr19:3271003-3271310]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28276[chr19:3271003-3271310]
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Tissue distribution of vista28276
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Transcription factor that possibly regulate vista28276[chr19:3271003-3271310]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 3270909 3271300 RCOR1 UCSC Txn Factor no Conserved 108365427
chr19 3271010 3271020 MEF2A JASPAR yes 70786066
chr19 3271011 3271023 POU2F1 JASPAR yes 70786067
chr19 3271011 3271024 POU3F3 JASPAR yes 70786068
chr19 3271012 3271023 FOXB1 JASPAR yes 70786069
chr19 3271012 3271024 POU3F1 JASPAR yes 70786070
chr19 3271013 3271017 YY1 TRANSFAC yes 70786071
chr19 3271013 3271022 POU5F1B JASPAR yes 70786072
chr19 3271013 3271024 FOXB1 JASPAR yes 70786073
chr19 3271014 3271023 POU5F1B JASPAR yes 70786074
chr19 3271062 3271067 SP1 TRANSFAC yes 70786075
chr19 3271062 3271081 RFX2 JASPAR yes 70786076
chr19 3271066 3271082 RFX2 JASPAR yes 70786077
chr19 3271066 3271082 RFX3 JASPAR yes 70786078
chr19 3271066 3271082 RFX4 JASPAR yes 70786079
chr19 3271066 3271082 RFX5 JASPAR yes 70786080
chr19 3271067 3271086 RFX2 JASPAR yes 70786081
chr19 3271069 3271084 RFX5 JASPAR yes 70786082
chr19 3271090 3271103 ELF3 JASPAR yes 70786083
chr19 3271091 3271102 ELF5 JASPAR yes 70786084
chr19 3271091 3271103 EHF JASPAR yes 70786085
chr19 3271093 3271099 ETS1 JASPAR yes 70786086
chr19 3271093 3271099 SPI1 JASPAR yes 70786087
chr19 3271102 3271113 FOS JASPAR yes 70786088
chr19 3271102 3271113 FOSL1 JASPAR yes 70786089
chr19 3271102 3271113 JUND JASPAR yes 70786090
chr19 3271104 3271110 JUN TRANSFAC yes 70786091
chr19 3271108 3271127 RFX2 JASPAR yes 70786092
chr19 3271112 3271128 RFX2 JASPAR yes 70786093
chr19 3271112 3271128 RFX3 JASPAR yes 70786094
chr19 3271112 3271128 RFX4 JASPAR yes 70786095
chr19 3271112 3271128 RFX5 JASPAR yes 70786096
chr19 3271113 3271132 RFX2 JASPAR yes 70786097
chr19 3271115 3271130 RFX5 JASPAR yes 70786098
chr19 3271134 3271155 REST JASPAR yes 70786099
chr19 3271135 3271154 REST JASPAR yes 70786100
chr19 3271145 3271166 ZNF263 JASPAR yes 70786101
chr19 3271146 3271167 ZNF263 JASPAR yes 70786102
chr19 3271150 3271160 SP1 JASPAR yes 70786103
chr19 3271152 3271158 MAZ TRANSFAC yes 70786104
chr19 3271152 3271162 SP1 JASPAR yes 70786105
chr19 3271153 3271163 MZF1 JASPAR yes 70786106
chr19 3271153 3271174 ZNF263 JASPAR yes 70786107
chr19 3271157 3271167 SP1 JASPAR yes 70786108
chr19 3271179 3271189 SP1 JASPAR yes 70786109
chr19 3271179 3271199 RREB1 JASPAR yes 70786110
chr19 3271179 3271200 ZNF263 JASPAR yes 70786111
chr19 3271180 3271190 SP1 JASPAR yes 70786112
chr19 3271181 3271201 RREB1 JASPAR yes 70786113
chr19 3271182 3271187 SP1 TRANSFAC yes 70786114
chr19 3271183 3271203 RREB1 JASPAR yes 70786115
chr19 3271184 3271204 RREB1 JASPAR yes 70786116
chr19 3271184 3271205 ZNF263 JASPAR yes 70786117
chr19 3271185 3271205 RREB1 JASPAR yes 70786118
chr19 3271186 3271197 E2F6 JASPAR yes 70786119
chr19 3271186 3271200 PLAG1 JASPAR yes 70786120
chr19 3271187 3271192 SP1 TRANSFAC yes 70786121
chr19 3271188 3271198 SP1 JASPAR yes 70786122
chr19 3271188 3271198 ZNF740 JASPAR yes 70786123
chr19 3271190 3271196 MAZ TRANSFAC yes 70786124
chr19 3271193 3271214 ZNF263 JASPAR yes 70786125
chr19 3271196 3271201 SP1 TRANSFAC yes 70786126
chr19 3271197 3271207 ZNF740 JASPAR yes 70786127
chr19 3271200 3271221 ZNF263 JASPAR yes 70786128
chr19 3271224 3271233 SNAI2 JASPAR yes 70786129
chr19 3271224 3271234 ID4 JASPAR yes 70786130
chr19 3271224 3271234 TCF3 JASPAR yes 70786131
chr19 3271224 3271234 TCF4 JASPAR yes 70786132
chr19 3271231 3271241 ZNF740 JASPAR yes 70786133
chr19 3271234 3271255 ZNF263 JASPAR yes 70786134
chr19 3271237 3271258 ZNF263 JASPAR yes 70786135
chr19 3271243 3271264 ZNF263 JASPAR yes 70786136
chr19 3271244 3271250 MZF1 JASPAR yes 70786137
chr19 3271245 3271255 SP1 JASPAR yes 70786138
chr19 3271246 3271267 ZNF263 JASPAR yes 70786139
chr19 3271251 3271265 PLAG1 JASPAR yes 70786140
chr19 3271252 3271267 RFX5 JASPAR yes 70786141
chr19 3271261 3271271 SP1 JASPAR yes 70786142
chr19 3271261 3271271 ZNF740 JASPAR yes 70786143
chr19 3271265 3271275 SP1 JASPAR yes 70786144
chr19 3271287 3271291 H4TF2 TRANSFAC yes 70786145
SNP sites on vista28276[chr19:3271003-3271310]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 3271067 rs62125941 G A
RCOR1 RFX2 RFX3 RFX4 RFX5 SP1
5392711
chr19 3271221 rs528369492 C T
RCOR1 ZNF263
5392712
chr19 3271232 rs112062802 G GC
ID4 RCOR1 SNAI2 TCF3 TCF4 ZNF740
5392713
chr19 3271262 rs201593652 AC A
PLAG1 RCOR1 RFX5 SP1 ZNF263 ZNF740
5392714
chr19 3271262 rs529566315 ACC A
PLAG1 RCOR1 RFX5 SP1 ZNF263 ZNF740
5392715
chr19 3271262 rs551452923 AC A
PLAG1 RCOR1 RFX5 SP1 ZNF263 ZNF740
5392716
chr19 3271270 rs551305358 G A
RCOR1 SP1 ZNF740
5392717
Genes possibly regulated by vista28276[chr19:3271003-3271310]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 3172344 3180329 + S1PR4 ENSG00000125910.4 3172344 0.92 0.97 16802 1341
chr19 3185561 3209573 + NCLN ENSG00000125912.6 3185561 0.65 1.0 16803 14558
chr19 3224701 3297074 + CELF5 ENSG00000161082.8 3224701 0.97 1.0 16804 53698
chr19 3359561 3469215 + NFIC ENSG00000141905.13 3359561 0.73 1.0 16805 11749
Expression level of Genes
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miRNAs possibly regulated by vista28276[chr19:3271003-3271310]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results