EnhancerDB
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  3. vista28302[chr19:3552794-3553085]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28302[chr19:3552794-3553085]
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Tissue distribution of vista28302
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Transcription factor that possibly regulate vista28302[chr19:3552794-3553085]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 3552892 3553248 IRF1 UCSC Txn Factor no Conserved 108367791
chr19 3552923 3553208 SPI1 UCSC Txn Factor no Conserved 108367801
chr19 3552782 3552800 NR3C1 JASPAR yes 70787806
chr19 3552782 3552800 NR3C1 JASPAR yes 112138593
chr19 3552790 3552795 GATA1 TRANSFAC yes 70787807
chr19 3552790 3552795 GATA1 TRANSFAC yes 112138594
chr19 3552800 3552811 FOS JASPAR yes 70787808
chr19 3552800 3552811 FOS JASPAR yes 112138595
chr19 3552802 3552808 JUN TRANSFAC yes 70787809
chr19 3552802 3552808 JUN TRANSFAC yes 112138596
chr19 3552806 3552809 MYB TRANSFAC yes 70787810
chr19 3552806 3552809 MYB TRANSFAC yes 112138597
chr19 3552806 3552815 SOX9 JASPAR yes 70787811
chr19 3552806 3552815 SOX9 JASPAR yes 112138598
chr19 3552820 3552831 NFE2L2 JASPAR yes 70787812
chr19 3552820 3552831 NFE2L2 JASPAR yes 112138599
chr19 3552836 3552854 IRF2 JASPAR yes 70787813
chr19 3552836 3552854 IRF2 JASPAR yes 112138600
chr19 3552838 3552858 PPARG JASPAR yes 70787814
chr19 3552838 3552858 PPARG JASPAR yes 112138601
chr19 3552841 3552853 IRF1 JASPAR yes 70787815
chr19 3552841 3552853 IRF1 JASPAR yes 112138602
chr19 3552846 3552850 YY1 TRANSFAC yes 70787816
chr19 3552846 3552850 YY1 TRANSFAC yes 112138603
chr19 3552849 3552854 GATA2 JASPAR yes 70787817
chr19 3552849 3552854 GATA2 JASPAR yes 112138604
chr19 3552855 3552859 YY1 TRANSFAC yes 70787818
chr19 3552855 3552859 YY1 TRANSFAC yes 112138605
chr19 3552856 3552866 NFATC3 JASPAR yes 70787819
chr19 3552856 3552866 NFATC3 JASPAR yes 112138606
chr19 3552857 3552864 NFATC2 JASPAR yes 70787820
chr19 3552857 3552864 NFATC2 JASPAR yes 112138607
chr19 3552907 3552918 STAT3 JASPAR yes 70787821
chr19 3552907 3552918 STAT3 JASPAR yes 112138608
chr19 3552908 3552923 TFAP2C JASPAR yes 70787822
chr19 3552908 3552923 TFAP2C JASPAR yes 112138609
chr19 3552937 3552952 TFAP2C JASPAR yes 70787823
chr19 3552937 3552952 TFAP2C JASPAR yes 112138610
chr19 3552938 3552949 TFAP2A JASPAR yes 70787824
chr19 3552938 3552949 TFAP2B JASPAR yes 70787825
chr19 3552938 3552949 TFAP2C JASPAR yes 70787826
chr19 3552938 3552949 TFAP2A JASPAR yes 112138611
chr19 3552938 3552949 TFAP2B JASPAR yes 112138612
chr19 3552938 3552949 TFAP2C JASPAR yes 112138613
chr19 3552939 3552948 TFAP2A JASPAR yes 70787827
chr19 3552939 3552948 TFAP2A JASPAR yes 112138614
chr19 3552943 3552962 REST JASPAR yes 70787828
chr19 3552943 3552962 REST JASPAR yes 112138615
chr19 3552944 3552948 LFA1 TRANSFAC yes 70787829
chr19 3552944 3552948 LFA1 TRANSFAC yes 112138616
chr19 3552945 3552955 ID4 JASPAR yes 70787830
chr19 3552945 3552955 TCF4 JASPAR yes 70787831
chr19 3552945 3552955 ID4 JASPAR yes 112138617
chr19 3552945 3552955 TCF4 JASPAR yes 112138618
chr19 3552947 3552952 USF2 TRANSFAC yes 70787832
chr19 3552947 3552952 USF2 TRANSFAC yes 112138619
chr19 3552988 3552996 EHF JASPAR yes 70787833
chr19 3552988 3552996 EHF JASPAR yes 112138620
chr19 3552990 3553009 CTCF JASPAR yes 70787834
chr19 3552990 3553009 CTCF JASPAR yes 112138621
chr19 3553001 3553016 JUND JASPAR yes 70787835
chr19 3553001 3553016 JUND JASPAR yes 112138622
chr19 3553002 3553015 JUN JASPAR yes 70787836
chr19 3553002 3553015 JUN JASPAR yes 112138623
chr19 3553003 3553017 ATF7 JASPAR yes 70787837
chr19 3553003 3553017 ATF7 JASPAR yes 112138624
chr19 3553004 3553016 JDP2 JASPAR yes 70787838
chr19 3553004 3553016 JDP2 JASPAR yes 112138625
chr19 3553004 3553019 JUND JASPAR yes 70787839
chr19 3553004 3553019 JUND JASPAR yes 112138626
chr19 3553005 3553013 NR4A2 JASPAR yes 70787840
chr19 3553005 3553013 NR4A2 JASPAR yes 112138627
chr19 3553005 3553018 JUN JASPAR yes 70787841
chr19 3553005 3553018 JUN JASPAR yes 112138628
chr19 3553006 3553014 CREB1 JASPAR yes 70787842
chr19 3553006 3553014 CREB1 JASPAR yes 112138629
chr19 3553014 3553020 MZF1 JASPAR yes 70787843
chr19 3553014 3553020 MZF1 JASPAR yes 112138630
chr19 3553028 3553035 SP1 TRANSFAC yes 70787844
chr19 3553028 3553035 SP1 TRANSFAC yes 112138631
chr19 3553028 3553038 SP1 JASPAR yes 70787845
chr19 3553028 3553038 SP1 JASPAR yes 112138632
chr19 3553029 3553036 SP1 TRANSFAC yes 70787846
chr19 3553029 3553036 SP1 TRANSFAC yes 112138633
chr19 3553030 3553035 SP1 TRANSFAC yes 70787847
chr19 3553030 3553035 SP1 TRANSFAC yes 112138634
chr19 3553030 3553036 SP1 TRANSFAC yes 70787848
chr19 3553030 3553036 SP1 TRANSFAC yes 112138635
chr19 3553030 3553037 SP1 TRANSFAC yes 70787849
chr19 3553030 3553037 SP1 TRANSFAC yes 112138636
chr19 3553031 3553045 EBF1 JASPAR yes 70787850
chr19 3553031 3553045 EBF1 JASPAR yes 112138637
chr19 3553032 3553043 EBF1 JASPAR yes 70787851
chr19 3553032 3553043 EBF1 JASPAR yes 112138638
chr19 3553048 3553069 IRF1 JASPAR yes 70787852
chr19 3553048 3553069 IRF1 JASPAR yes 112138639
chr19 3553050 3553065 IRF9 JASPAR yes 70787853
chr19 3553050 3553065 IRF9 JASPAR yes 112138640
chr19 3553052 3553057 ETS2 TRANSFAC yes 70787854
chr19 3553052 3553057 ETS2 TRANSFAC yes 112138641
chr19 3553052 3553066 STAT1 JASPAR yes 70787855
chr19 3553052 3553066 STAT1 JASPAR yes 112138642
chr19 3553052 3553067 PRDM1 JASPAR yes 70787856
chr19 3553052 3553067 STAT2 JASPAR yes 70787857
chr19 3553052 3553067 PRDM1 JASPAR yes 112138643
chr19 3553052 3553067 STAT2 JASPAR yes 112138644
chr19 3553052 3553070 IRF2 JASPAR yes 70787858
chr19 3553052 3553070 IRF2 JASPAR yes 112138645
chr19 3553053 3553065 IRF1 JASPAR yes 70787859
chr19 3553053 3553065 IRF1 JASPAR yes 112138646
chr19 3553054 3553075 IRF1 JASPAR yes 70787860
chr19 3553054 3553075 IRF1 JASPAR yes 112138647
chr19 3553056 3553071 IRF9 JASPAR yes 70787861
chr19 3553056 3553071 IRF9 JASPAR yes 112138648
chr19 3553057 3553071 IRF8 JASPAR yes 70787862
chr19 3553057 3553071 IRF8 JASPAR yes 112138649
chr19 3553058 3553073 STAT2 JASPAR yes 70787863
chr19 3553058 3553073 STAT2 JASPAR yes 112138650
chr19 3553059 3553071 IRF1 JASPAR yes 70787864
chr19 3553059 3553071 IRF1 JASPAR yes 112138651
chr19 3553080 3553099 RFX2 JASPAR yes 70787865
chr19 3553080 3553099 RFX2 JASPAR yes 112138652
SNP sites on vista28302[chr19:3552794-3553085]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 3552895 rs189664883 C T
IRF1
5395495
chr19 3553033 rs115928860 G A
EBF1 IRF1 SP1 SPI1
5395496
chr19 3553034 rs180678845 C A
EBF1 IRF1 SP1 SPI1
5395497
Genes possibly regulated by vista28302[chr19:3552794-3553085]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 3474405 3480540 - C19orf77 ENSG00000095932.5 3480540 0.99 0.98 16806 27746
chr19 3490819 3500938 - DOHH ENSG00000129932.3 3500938 0.62 1.0 16807 48144
chr19 3506271 3538328 + FZR1 ENSG00000105325.9 3506271 0.64 1.0 16808 53477
chr19 3538259 3574288 - MFSD12 ENSG00000161091.8 3574288 0.79 1.0 16809 78797
chr19 3539152 3544028 + C19orf71 ENSG00000183397.5 3539152 0.83 1.0 16810 86358
chr19 3572775 3579086 + HMG20B ENSG00000064961.14 3572775 0.58 1.0 16811 80310
chr19 3585551 3593539 + GIPC3 ENSG00000179855.5 3585551 0.78 0.94 16812 67534
chr19 3594504 3606838 - TBXA2R ENSG00000006638.7 3606838 0.76 1.0 16813 46247
chr19 3610639 3626813 - CACTIN ENSG00000105298.9 3626813 0.64 1.0 16814 26272
Expression level of Genes
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miRNAs possibly regulated by vista28302[chr19:3552794-3553085]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results