EnhancerDB
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  3. vista28303[chr19:3555158-3555442]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28303[chr19:3555158-3555442]
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Tissue distribution of vista28303
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Transcription factor that possibly regulate vista28303[chr19:3555158-3555442]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 3555402 3558474 POLR2A UCSC Txn Factor no Conserved 108367834
chr19 3555214 3555222 TBX15 JASPAR yes 70787866
chr19 3555214 3555222 TBX15 JASPAR yes 112139072
chr19 3555258 3555277 PAX5 JASPAR yes 70787867
chr19 3555258 3555277 PAX5 JASPAR yes 112139073
chr19 3555299 3555311 YY1 JASPAR yes 70787868
chr19 3555299 3555311 YY1 JASPAR yes 112139074
chr19 3555328 3555341 NR2F1 JASPAR yes 70787869
chr19 3555328 3555341 NR2F1 JASPAR yes 112139075
chr19 3555332 3555340 CREB1 JASPAR yes 70787870
chr19 3555332 3555340 CREB1 JASPAR yes 112139076
chr19 3555338 3555347 ZEB1 JASPAR yes 70787871
chr19 3555338 3555347 ZEB1 JASPAR yes 112139077
chr19 3555367 3555375 MEIS2 JASPAR yes 70787872
chr19 3555367 3555375 MEIS3 JASPAR yes 70787873
chr19 3555367 3555375 MEIS2 JASPAR yes 112139078
chr19 3555367 3555375 MEIS3 JASPAR yes 112139079
chr19 3555368 3555380 PKNOX1 JASPAR yes 70787874
chr19 3555368 3555380 TGIF1 JASPAR yes 70787875
chr19 3555368 3555380 PKNOX1 JASPAR yes 112139080
chr19 3555368 3555380 TGIF1 JASPAR yes 112139081
chr19 3555376 3555387 FOSL2 JASPAR yes 70787876
chr19 3555376 3555387 FOSL2 JASPAR yes 112139082
chr19 3555382 3555387 MYC TRANSFAC yes 70787877
chr19 3555382 3555387 MYC TRANSFAC yes 112139083
chr19 3555393 3555400 SP1 TRANSFAC yes 70787878
chr19 3555393 3555400 SP1 TRANSFAC yes 112139084
chr19 3555395 3555400 SP1 TRANSFAC yes 70787879
chr19 3555395 3555400 SP1 TRANSFAC yes 112139085
chr19 3555419 3555423 NFE TRANSFAC yes 70787880
chr19 3555419 3555423 NFE TRANSFAC yes 112139086
chr19 3555419 3555426 MEIS1 JASPAR yes 70787881
chr19 3555419 3555426 MEIS1 JASPAR yes 112139087
chr19 3555432 3555437 GATA2 JASPAR yes 70787882
chr19 3555432 3555437 GATA2 JASPAR yes 112139088
SNP sites on vista28303[chr19:3555158-3555442]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 3555386 rs138821531 C T
FOSL2 MYC
5395548
chr19 3555415 rs61018866 C T
POLR2A
5395549
chr19 3555417 rs553858232 C A,T
POLR2A
5395550
Genes possibly regulated by vista28303[chr19:3555158-3555442]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 3474405 3480540 - C19orf77 ENSG00000095932.5 3480540 0.99 0.98 16806 25382
chr19 3490819 3500938 - DOHH ENSG00000129932.3 3500938 0.62 1.0 16807 45780
chr19 3506271 3538328 + FZR1 ENSG00000105325.9 3506271 0.64 1.0 16808 51113
chr19 3538259 3574288 - MFSD12 ENSG00000161091.8 3574288 0.79 1.0 16809 81154
chr19 3539152 3544028 + C19orf71 ENSG00000183397.5 3539152 0.83 1.0 16810 83994
chr19 3572775 3579086 + HMG20B ENSG00000064961.14 3572775 0.58 1.0 16811 82667
chr19 3585551 3593539 + GIPC3 ENSG00000179855.5 3585551 0.78 0.94 16812 69891
chr19 3594504 3606838 - TBXA2R ENSG00000006638.7 3606838 0.76 1.0 16813 48604
chr19 3610639 3626813 - CACTIN ENSG00000105298.9 3626813 0.64 1.0 16814 28629
Expression level of Genes
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miRNAs possibly regulated by vista28303[chr19:3555158-3555442]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results