EnhancerDB
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  3. vista28304[chr19:3562421-3562565]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28304[chr19:3562421-3562565]
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Tissue distribution of vista28304
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Transcription factor that possibly regulate vista28304[chr19:3562421-3562565]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 3562213 3563068 POLR2A UCSC Txn Factor no Conserved 108367860
chr19 3562342 3562460 USF2 UCSC Txn Factor no Conserved 108367892
chr19 3562415 3562430 SCRT1 JASPAR yes 70787883
chr19 3562415 3562430 SCRT1 JASPAR yes 112139801
chr19 3562419 3562428 SNAI2 JASPAR yes 70787884
chr19 3562419 3562428 SNAI2 JASPAR yes 112139802
chr19 3562419 3562429 ID4 JASPAR yes 70787885
chr19 3562419 3562429 TCF3 JASPAR yes 70787886
chr19 3562419 3562429 TCF4 JASPAR yes 70787887
chr19 3562419 3562429 ID4 JASPAR yes 112139803
chr19 3562419 3562429 TCF3 JASPAR yes 112139804
chr19 3562419 3562429 TCF4 JASPAR yes 112139805
chr19 3562432 3562436 NFE TRANSFAC yes 70787888
chr19 3562432 3562436 NFE TRANSFAC yes 112139806
chr19 3562435 3562456 ZNF263 JASPAR yes 70787889
chr19 3562435 3562456 ZNF263 JASPAR yes 112139807
chr19 3562455 3562461 LEF1 TRANSFAC yes 70787890
chr19 3562455 3562461 SOX10 JASPAR yes 70787891
chr19 3562455 3562461 LEF1 TRANSFAC yes 112139808
chr19 3562455 3562461 SOX10 JASPAR yes 112139809
chr19 3562469 3562489 TP63 JASPAR yes 70787892
chr19 3562469 3562489 TP63 JASPAR yes 112139810
chr19 3562509 3562530 ZNF263 JASPAR yes 70787893
chr19 3562509 3562530 ZNF263 JASPAR yes 112139811
chr19 3562512 3562522 SP1 JASPAR yes 70787894
chr19 3562512 3562522 SP1 JASPAR yes 112139812
chr19 3562513 3562523 SP1 JASPAR yes 70787895
chr19 3562513 3562523 SP1 JASPAR yes 112139813
chr19 3562547 3562559 TEAD1 JASPAR yes 70787896
chr19 3562547 3562559 TEAD1 JASPAR yes 112139814
chr19 3562559 3562579 RREB1 JASPAR yes 70787897
chr19 3562559 3562579 RREB1 JASPAR yes 112139815
chr19 3562563 3562578 RUNX2 JASPAR yes 70787898
chr19 3562563 3562578 RUNX2 JASPAR yes 112139816
chr19 3562564 3562584 RREB1 JASPAR yes 70787899
chr19 3562564 3562584 RREB1 JASPAR yes 112139817
SNP sites on vista28304[chr19:3562421-3562565]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 3562467 rs537877218 G A
POLR2A
5395676
chr19 3562509 rs150801098 C T
POLR2A ZNF263
5395677
Genes possibly regulated by vista28304[chr19:3562421-3562565]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 3474405 3480540 - C19orf77 ENSG00000095932.5 3480540 0.99 0.98 16806 18119
chr19 3490819 3500938 - DOHH ENSG00000129932.3 3500938 0.62 1.0 16807 38517
chr19 3506271 3538328 + FZR1 ENSG00000105325.9 3506271 0.64 1.0 16808 43850
chr19 3538259 3574288 - MFSD12 ENSG00000161091.8 3574288 0.79 1.0 16809 88277
chr19 3539152 3544028 + C19orf71 ENSG00000183397.5 3539152 0.83 1.0 16810 76731
chr19 3572775 3579086 + HMG20B ENSG00000064961.14 3572775 0.58 1.0 16811 89790
chr19 3585551 3593539 + GIPC3 ENSG00000179855.5 3585551 0.78 0.94 16812 77014
chr19 3594504 3606838 - TBXA2R ENSG00000006638.7 3606838 0.76 1.0 16813 55727
chr19 3610639 3626813 - CACTIN ENSG00000105298.9 3626813 0.64 1.0 16814 35752
Expression level of Genes
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miRNAs possibly regulated by vista28304[chr19:3562421-3562565]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results