EnhancerDB
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  3. vista28316[chr19:3693047-3693257]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28316[chr19:3693047-3693257]
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Tissue distribution of vista28316
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Transcription factor that possibly regulate vista28316[chr19:3693047-3693257]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 3693052 3693073 IRF1 JASPAR yes 70788424
chr19 3693052 3693073 IRF1 JASPAR yes 112145957
chr19 3693056 3693068 IRF1 JASPAR yes 70788425
chr19 3693056 3693068 IRF1 JASPAR yes 112145958
chr19 3693056 3693071 IRF9 JASPAR yes 70788426
chr19 3693056 3693071 IRF9 JASPAR yes 112145959
chr19 3693068 3693074 TCF4 TRANSFAC yes 70788427
chr19 3693068 3693074 TCF4 TRANSFAC yes 112145960
chr19 3693073 3693077 NFE TRANSFAC yes 70788428
chr19 3693073 3693077 NFE TRANSFAC yes 112145961
chr19 3693095 3693111 ZNF143 JASPAR yes 70788429
chr19 3693095 3693111 ZNF143 JASPAR yes 112145962
chr19 3693104 3693109 ETS2 TRANSFAC yes 70788430
chr19 3693104 3693109 ETS2 TRANSFAC yes 112145963
chr19 3693112 3693117 SP1 TRANSFAC yes 70788431
chr19 3693112 3693117 SP1 TRANSFAC yes 112145964
chr19 3693127 3693142 TFAP2C JASPAR yes 70788432
chr19 3693127 3693142 TFAP2C JASPAR yes 112145965
chr19 3693129 3693141 INSM1 JASPAR yes 70788433
chr19 3693129 3693141 INSM1 JASPAR yes 112145966
chr19 3693130 3693141 TFAP2A JASPAR yes 70788434
chr19 3693130 3693141 TFAP2B JASPAR yes 70788435
chr19 3693130 3693141 TFAP2A JASPAR yes 112145967
chr19 3693130 3693141 TFAP2B JASPAR yes 112145968
chr19 3693130 3693144 PLAG1 JASPAR yes 70788436
chr19 3693130 3693144 PLAG1 JASPAR yes 112145969
chr19 3693131 3693140 TFAP2A JASPAR yes 70788437
chr19 3693131 3693140 TFAP2A JASPAR yes 112145970
chr19 3693149 3693164 RUNX2 JASPAR yes 70788438
chr19 3693149 3693164 RUNX2 JASPAR yes 112145971
chr19 3693201 3693216 STAT1 JASPAR yes 70788439
chr19 3693201 3693216 STAT1 JASPAR yes 112145972
chr19 3693208 3693214 ETS1 JASPAR yes 70788440
chr19 3693208 3693214 ETS1 JASPAR yes 112145973
chr19 3693234 3693240 TCF4 TRANSFAC yes 70788441
chr19 3693234 3693240 TCF4 TRANSFAC yes 112145974
chr19 3693247 3693258 NFE2 JASPAR yes 70788442
chr19 3693247 3693258 NFE2 JASPAR yes 112145975
chr19 3693254 3693258 YY1 TRANSFAC yes 70788443
chr19 3693254 3693258 YY1 TRANSFAC yes 112145976
SNP sites on vista28316[chr19:3693047-3693257]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 3693051 rs11381509 G GT no 5396717
chr19 3693051 rs397691762 G GT no 5396718
chr19 3693057 rs75728385 T C
IRF1 IRF9
5396719
chr19 3693089 rs189273187 G T no 5396720
chr19 3693189 rs573646250 C G no 5396721
chr19 3693244 rs528189197 G C no 5396722
Genes possibly regulated by vista28316[chr19:3693047-3693257]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 3594504 3606838 - TBXA2R ENSG00000006638.7 3606838 0.76 1.0 16813 13791
chr19 3610639 3626813 - CACTIN ENSG00000105298.9 3626813 0.64 1.0 16814 33766
chr19 3630181 3700477 - PIP5K1C ENSG00000186111.4 3700477 0.79 1.0 16815 92780
chr19 3708107 3750811 + TJP3 ENSG00000105289.10 3708107 0.78 1.0 16816 85150
chr19 3750817 3761697 - APBA3 ENSG00000011132.7 3761697 0.55 1.0 16817 31560
chr19 3762662 3768573 + MRPL54 ENSG00000183617.4 3762662 0.59 0.99 16818 30595
chr19 3769087 3772233 - RAX2 ENSG00000173976.11 3772233 0.98 1.0 16819 21024
Expression level of Genes
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miRNAs possibly regulated by vista28316[chr19:3693047-3693257]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results