EnhancerDB
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  3. vista28328[chr19:4059877-4060289]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28328[chr19:4059877-4060289]
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Tissue distribution of vista28328
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Transcription factor that possibly regulate vista28328[chr19:4059877-4060289]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 4059960 4060174 EGR1 UCSC Txn Factor no Conserved 108369650
chr19 4059875 4059885 NFIA JASPAR yes 70789026
chr19 4059875 4059885 NFIA JASPAR yes 112157481
chr19 4059876 4059885 NFIX JASPAR yes 70789027
chr19 4059876 4059885 NFIX JASPAR yes 112157482
chr19 4059877 4059883 NFIC JASPAR yes 70789028
chr19 4059877 4059883 NFIC JASPAR yes 112157483
chr19 4059878 4059889 CDX2 JASPAR yes 70789029
chr19 4059878 4059889 CDX2 JASPAR yes 112157484
chr19 4059879 4059890 HOXA10 JASPAR yes 70789030
chr19 4059879 4059890 HOXA10 JASPAR yes 112157485
chr19 4059880 4059889 CDX1 JASPAR yes 70789031
chr19 4059880 4059889 CDX1 JASPAR yes 112157486
chr19 4059880 4059890 HOXA13 JASPAR yes 70789032
chr19 4059880 4059890 HOXB13 JASPAR yes 70789033
chr19 4059880 4059890 HOXD13 JASPAR yes 70789034
chr19 4059880 4059890 HOXA13 JASPAR yes 112157487
chr19 4059880 4059890 HOXB13 JASPAR yes 112157488
chr19 4059880 4059890 HOXD13 JASPAR yes 112157489
chr19 4059903 4059917 ZIC1 JASPAR yes 70789035
chr19 4059903 4059917 ZIC1 JASPAR yes 112157490
chr19 4059903 4059918 ZIC3 JASPAR yes 70789036
chr19 4059903 4059918 ZIC4 JASPAR yes 70789037
chr19 4059903 4059918 ZIC3 JASPAR yes 112157491
chr19 4059903 4059918 ZIC4 JASPAR yes 112157492
chr19 4059913 4059927 MTF1 JASPAR yes 70789038
chr19 4059913 4059927 MTF1 JASPAR yes 112157493
chr19 4059945 4059960 IRF9 JASPAR yes 70789039
chr19 4059945 4059960 IRF9 JASPAR yes 112157494
chr19 4059947 4059956 RUNX2 JASPAR yes 70789040
chr19 4059947 4059956 RUNX2 JASPAR yes 112157495
chr19 4059949 4059964 STAT2 JASPAR yes 70789041
chr19 4059949 4059964 STAT2 JASPAR yes 112157496
chr19 4059950 4059964 STAT1 JASPAR yes 70789042
chr19 4059950 4059964 STAT1 JASPAR yes 112157497
chr19 4059960 4059966 SP1 TRANSFAC yes 70789043
chr19 4059960 4059966 SP1 TRANSFAC yes 112157498
chr19 4059960 4059970 SP1 JASPAR yes 70789044
chr19 4059960 4059970 SP1 JASPAR yes 112157499
chr19 4059963 4059978 STAT1 JASPAR yes 70789045
chr19 4059963 4059978 STAT1 JASPAR yes 112157500
chr19 4059968 4059975 ETS1 TRANSFAC yes 70789046
chr19 4059968 4059975 ETS1 TRANSFAC yes 112157501
chr19 4059970 4059980 NFKB1 JASPAR yes 70789047
chr19 4059970 4059980 NFKB1 JASPAR yes 112157502
chr19 4059976 4059986 SP1 JASPAR yes 70789048
chr19 4059976 4059986 SP1 JASPAR yes 112157503
chr19 4059979 4059993 TLX1 JASPAR yes 70789049
chr19 4059979 4059993 TLX1 JASPAR yes 112157504
chr19 4059996 4060000 H4TF2 TRANSFAC yes 70789050
chr19 4059996 4060000 H4TF2 TRANSFAC yes 112157505
chr19 4059998 4060004 MZF1 JASPAR yes 70789051
chr19 4059998 4060004 MZF1 JASPAR yes 112157506
chr19 4060007 4060026 REST JASPAR yes 70789052
chr19 4060007 4060026 REST JASPAR yes 112157507
chr19 4060011 4060031 ESR1 JASPAR yes 70789053
chr19 4060011 4060031 ESR1 JASPAR yes 112157508
chr19 4060015 4060027 HINFP JASPAR yes 70789054
chr19 4060015 4060027 HINFP JASPAR yes 112157509
chr19 4060018 4060022 H4TF2 TRANSFAC yes 70789055
chr19 4060018 4060022 H4TF2 TRANSFAC yes 112157510
chr19 4060019 4060030 EBF1 JASPAR yes 70789056
chr19 4060019 4060030 EBF1 JASPAR yes 112157511
chr19 4060047 4060052 SP1 TRANSFAC yes 70789057
chr19 4060047 4060052 SP1 TRANSFAC yes 112157512
chr19 4060069 4060079 SP1 JASPAR yes 70789058
chr19 4060069 4060079 SP1 JASPAR yes 112157513
chr19 4060070 4060091 ZNF263 JASPAR yes 70789059
chr19 4060070 4060091 ZNF263 JASPAR yes 112157514
chr19 4060092 4060102 RELA JASPAR yes 70789060
chr19 4060092 4060102 REL JASPAR yes 70789061
chr19 4060092 4060102 RELA JASPAR yes 112157515
chr19 4060092 4060102 REL JASPAR yes 112157516
chr19 4060092 4060103 NFKB1 JASPAR yes 70789062
chr19 4060092 4060103 NFKB1 JASPAR yes 112157517
chr19 4060093 4060103 RELA JASPAR yes 70789063
chr19 4060093 4060103 RELA JASPAR yes 112157518
chr19 4060094 4060105 ELK4 JASPAR yes 70789064
chr19 4060094 4060105 ELK4 JASPAR yes 112157519
chr19 4060095 4060100 H4TF1 TRANSFAC yes 70789065
chr19 4060095 4060100 H4TF1 TRANSFAC yes 112157520
chr19 4060095 4060107 ELF1 JASPAR yes 70789066
chr19 4060095 4060107 ELF1 JASPAR yes 112157521
chr19 4060096 4060104 FEV JASPAR yes 70789067
chr19 4060096 4060104 FEV JASPAR yes 112157522
chr19 4060096 4060105 ELK4 JASPAR yes 70789068
chr19 4060096 4060105 ELK4 JASPAR yes 112157523
chr19 4060097 4060103 ETS1 JASPAR yes 70789069
chr19 4060097 4060103 ETS1 JASPAR yes 112157524
chr19 4060097 4060107 ELK1 JASPAR yes 70789070
chr19 4060097 4060107 ELK1 JASPAR yes 112157525
chr19 4060108 4060126 MAFF JASPAR yes 70789071
chr19 4060108 4060126 MAFF JASPAR yes 112157526
chr19 4060110 4060121 NRL JASPAR yes 70789072
chr19 4060110 4060121 NRL JASPAR yes 112157527
chr19 4060110 4060125 MAFK JASPAR yes 70789073
chr19 4060110 4060125 MAFK JASPAR yes 112157528
chr19 4060110 4060131 MAFG JASPAR yes 70789074
chr19 4060110 4060131 MAFG JASPAR yes 112157529
chr19 4060131 4060151 TP53 JASPAR yes 70789075
chr19 4060131 4060151 TP53 JASPAR yes 112157530
chr19 4060133 4060137 LFA1 TRANSFAC yes 70789076
chr19 4060133 4060137 LFA1 TRANSFAC yes 112157531
chr19 4060133 4060153 TP63 JASPAR yes 70789077
chr19 4060133 4060153 TP63 JASPAR yes 112157532
chr19 4060134 4060152 TP53 JASPAR yes 70789078
chr19 4060134 4060152 TP53 JASPAR yes 112157533
chr19 4060135 4060150 TP53 JASPAR yes 70789079
chr19 4060135 4060150 TP53 JASPAR yes 112157534
chr19 4060150 4060156 SP1 TRANSFAC yes 70789080
chr19 4060150 4060156 SP1 TRANSFAC yes 112157535
chr19 4060163 4060173 SP1 JASPAR yes 70789081
chr19 4060163 4060173 SP1 JASPAR yes 112157536
chr19 4060166 4060171 SP1 TRANSFAC yes 70789082
chr19 4060166 4060171 SP1 TRANSFAC yes 112157537
chr19 4060175 4060196 ZNF263 JASPAR yes 70789083
chr19 4060175 4060196 ZNF263 JASPAR yes 112157538
chr19 4060177 4060187 SP1 JASPAR yes 70789084
chr19 4060177 4060187 SP1 JASPAR yes 112157539
chr19 4060179 4060194 TFAP2A JASPAR yes 70789085
chr19 4060179 4060194 TFAP2C JASPAR yes 70789086
chr19 4060179 4060194 TFAP2A JASPAR yes 112157540
chr19 4060179 4060194 TFAP2C JASPAR yes 112157541
chr19 4060181 4060193 TFAP2A JASPAR yes 70789087
chr19 4060181 4060193 TFAP2B JASPAR yes 70789088
chr19 4060181 4060193 TFAP2C JASPAR yes 70789089
chr19 4060181 4060193 TFAP2A JASPAR yes 112157542
chr19 4060181 4060193 TFAP2B JASPAR yes 112157543
chr19 4060181 4060193 TFAP2C JASPAR yes 112157544
chr19 4060181 4060195 PLAG1 JASPAR yes 70789090
chr19 4060181 4060195 PLAG1 JASPAR yes 112157545
chr19 4060181 4060196 TFAP2A JASPAR yes 70789091
chr19 4060181 4060196 TFAP2A JASPAR yes 112157546
chr19 4060182 4060194 TFAP2A JASPAR yes 70789092
chr19 4060182 4060194 TFAP2A JASPAR yes 112157547
chr19 4060183 4060192 TFAP2A JASPAR yes 70789093
chr19 4060183 4060192 TFAP2A JASPAR yes 112157548
chr19 4060256 4060261 GATA2 JASPAR yes 70789094
chr19 4060256 4060261 GATA2 JASPAR yes 112157549
chr19 4060276 4060281 SP1 TRANSFAC yes 70789095
chr19 4060276 4060281 SP1 TRANSFAC yes 112157550
SNP sites on vista28328[chr19:4059877-4060289]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 4059881 rs368041923 G C
CDX1 CDX2 HOXA10 HOXA13 HOXB13 HOXD13 NFIA NFIC NFIX
5398555
chr19 4059908 rs537006455 C A
ZIC1 ZIC3 ZIC4
5398556
chr19 4059989 rs538496865 G A
EGR1 TLX1
5398557
chr19 4060079 rs188588969 C A,G,T
EGR1 SP1 ZNF263
5398558
chr19 4060128 rs139031006 G GC
EGR1 MAFG
5398559
chr19 4060222 rs895331 C A no 5398560
Genes possibly regulated by vista28328[chr19:4059877-4060289]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 3958451 3971121 - DAPK3 ENSG00000167657.7 3971121 0.67 1.0 16824 11244
chr19 3976054 3985467 - EEF2 ENSG00000167658.11 3985467 0.75 1.0 16825 25590
chr19 4007644 4039384 + PIAS4 ENSG00000105229.2 4007644 0.63 1.0 16826 47767
chr19 4041127 4043154 - AC016586.1 ENSG00000205147.3 4043154 0.9 1.0 16827 83277
chr19 4044362 4066943 - ZBTB7A ENSG00000178951.4 4066943 0.77 1.0 16828 93346
chr19 4090319 4124126 - MAP2K2 ENSG00000126934.9 4124126 0.66 1.0 16829 36163
chr19 4153598 4173051 + CREB3L3 ENSG00000060566.9 4153598 1.0 0.96 16830 6691
Expression level of Genes
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miRNAs possibly regulated by vista28328[chr19:4059877-4060289]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results