EnhancerDB
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  3. vista28375[chr19:5048305-5048678]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28375[chr19:5048305-5048678]
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Tissue distribution of vista28375
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Transcription factor that possibly regulate vista28375[chr19:5048305-5048678]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 5048176 5048513 BHLHE40 UCSC Txn Factor no Conserved 108374405
chr19 5048241 5048711 ZNF263 UCSC Txn Factor no Conserved 108374433
chr19 5048257 5048862 CTCF UCSC Txn Factor no Conserved 108374437
chr19 5048323 5048618 SMC3 UCSC Txn Factor no Conserved 108374464
chr19 5048335 5048608 RAD21 UCSC Txn Factor no Conserved 108374466
chr19 5048311 5048321 BHLHE40 JASPAR yes 70791492
chr19 5048311 5048321 CLOCK JASPAR yes 70791493
chr19 5048311 5048321 HEY1 JASPAR yes 70791494
chr19 5048311 5048321 MAX JASPAR yes 70791495
chr19 5048311 5048321 MNT JASPAR yes 70791496
chr19 5048311 5048321 BHLHE40 JASPAR yes 112209448
chr19 5048311 5048321 CLOCK JASPAR yes 112209449
chr19 5048311 5048321 HEY1 JASPAR yes 112209450
chr19 5048311 5048321 MAX JASPAR yes 112209451
chr19 5048311 5048321 MNT JASPAR yes 112209452
chr19 5048313 5048318 MYC TRANSFAC yes 70791497
chr19 5048313 5048318 USF1 TRANSFAC yes 70791498
chr19 5048313 5048318 USF2 TRANSFAC yes 70791499
chr19 5048313 5048318 MYC TRANSFAC yes 112209453
chr19 5048313 5048318 USF1 TRANSFAC yes 112209454
chr19 5048313 5048318 USF2 TRANSFAC yes 112209455
chr19 5048337 5048347 BHLHE40 JASPAR yes 70791500
chr19 5048337 5048347 BHLHE41 JASPAR yes 70791501
chr19 5048337 5048347 TFEC JASPAR yes 70791502
chr19 5048337 5048347 BHLHE40 JASPAR yes 112209456
chr19 5048337 5048347 BHLHE41 JASPAR yes 112209457
chr19 5048337 5048347 TFEC JASPAR yes 112209458
chr19 5048339 5048344 MYC TRANSFAC yes 70791503
chr19 5048339 5048344 USF1 TRANSFAC yes 70791504
chr19 5048339 5048344 USF2 TRANSFAC yes 70791505
chr19 5048339 5048344 MYC TRANSFAC yes 112209459
chr19 5048339 5048344 USF1 TRANSFAC yes 112209460
chr19 5048339 5048344 USF2 TRANSFAC yes 112209461
chr19 5048378 5048396 ESR2 JASPAR yes 70791506
chr19 5048378 5048396 ESR2 JASPAR yes 112209462
chr19 5048428 5048438 NFKB1 JASPAR yes 70791507
chr19 5048428 5048438 NFKB1 JASPAR yes 112209463
chr19 5048428 5048439 NFKB1 JASPAR yes 70791508
chr19 5048428 5048439 NFKB1 JASPAR yes 112209464
chr19 5048442 5048446 NFE TRANSFAC yes 70791509
chr19 5048442 5048446 NFE TRANSFAC yes 112209465
chr19 5048453 5048472 CTCF JASPAR yes 70791510
chr19 5048453 5048472 CTCF JASPAR yes 112209466
chr19 5048467 5048478 E2F4 JASPAR yes 70791511
chr19 5048467 5048478 E2F6 JASPAR yes 70791512
chr19 5048467 5048478 E2F4 JASPAR yes 112209467
chr19 5048467 5048478 E2F6 JASPAR yes 112209468
chr19 5048468 5048479 E2F1 JASPAR yes 70791513
chr19 5048468 5048479 E2F1 JASPAR yes 112209469
chr19 5048472 5048477 SP1 TRANSFAC yes 70791514
chr19 5048472 5048477 SP1 TRANSFAC yes 112209470
chr19 5048483 5048488 SP1 TRANSFAC yes 70791515
chr19 5048483 5048488 SP1 TRANSFAC yes 112209471
chr19 5048495 5048506 STAT3 JASPAR yes 70791516
chr19 5048495 5048506 STAT3 JASPAR yes 112209472
chr19 5048496 5048511 HSF1 JASPAR yes 70791517
chr19 5048496 5048511 HSF1 JASPAR yes 112209473
chr19 5048546 5048559 TFAP2A JASPAR yes 70791518
chr19 5048546 5048559 TFAP2B JASPAR yes 70791519
chr19 5048546 5048559 TFAP2C JASPAR yes 70791520
chr19 5048546 5048559 TFAP2A JASPAR yes 112209474
chr19 5048546 5048559 TFAP2B JASPAR yes 112209475
chr19 5048546 5048559 TFAP2C JASPAR yes 112209476
chr19 5048607 5048617 SP1 JASPAR yes 70791521
chr19 5048607 5048617 SP1 JASPAR yes 112209477
chr19 5048607 5048628 ZNF263 JASPAR yes 70791522
chr19 5048607 5048628 ZNF263 JASPAR yes 112209478
chr19 5048608 5048618 SP1 JASPAR yes 70791523
chr19 5048608 5048618 SP1 JASPAR yes 112209479
chr19 5048608 5048629 ZNF263 JASPAR yes 70791524
chr19 5048608 5048629 ZNF263 JASPAR yes 112209480
chr19 5048610 5048631 ZNF263 JASPAR yes 70791525
chr19 5048610 5048631 ZNF263 JASPAR yes 112209481
chr19 5048611 5048621 SP1 JASPAR yes 70791526
chr19 5048611 5048621 ZNF740 JASPAR yes 70791527
chr19 5048611 5048621 SP1 JASPAR yes 112209482
chr19 5048611 5048621 ZNF740 JASPAR yes 112209483
chr19 5048612 5048622 ZNF740 JASPAR yes 70791528
chr19 5048612 5048622 ZNF740 JASPAR yes 112209484
chr19 5048616 5048623 SP1 TRANSFAC yes 70791529
chr19 5048616 5048623 SP1 TRANSFAC yes 112209485
chr19 5048616 5048626 SP1 JASPAR yes 70791530
chr19 5048616 5048626 SP1 JASPAR yes 112209486
chr19 5048617 5048625 SP1 TRANSFAC yes 70791531
chr19 5048617 5048625 SP1 TRANSFAC yes 112209487
chr19 5048618 5048623 SP1 TRANSFAC yes 70791532
chr19 5048618 5048623 SP1 TRANSFAC yes 112209488
chr19 5048618 5048629 E2F4 JASPAR yes 70791533
chr19 5048618 5048629 E2F4 JASPAR yes 112209489
chr19 5048619 5048624 SP1 TRANSFAC yes 70791534
chr19 5048619 5048624 SP1 TRANSFAC yes 112209490
chr19 5048619 5048625 SP1 TRANSFAC yes 70791535
chr19 5048619 5048625 SP1 TRANSFAC yes 112209491
chr19 5048647 5048653 TBP TRANSFAC yes 70791536
chr19 5048647 5048653 TBP TRANSFAC yes 112209492
chr19 5048653 5048674 ZNF263 JASPAR yes 70791537
chr19 5048653 5048674 ZNF263 JASPAR yes 112209493
chr19 5048665 5048676 FLI1 JASPAR yes 70791538
chr19 5048665 5048676 FLI1 JASPAR yes 112209494
chr19 5048666 5048674 EHF JASPAR yes 70791539
chr19 5048666 5048674 EHF JASPAR yes 112209495
SNP sites on vista28375[chr19:5048305-5048678]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 5048338 rs77633048 C T
BHLHE40 BHLHE41 CTCF RAD21 SMC3 TFEC ZNF263
5406046
chr19 5048367 rs117371451 G A,C
BHLHE40 CTCF RAD21 SMC3 ZNF263
5406047
chr19 5048374 rs858423 T C
BHLHE40 CTCF RAD21 SMC3 ZNF263
5406048
chr19 5048408 rs572782035 G A
BHLHE40 CTCF RAD21 SMC3 ZNF263
5406049
chr19 5048426 rs116534791 C G
BHLHE40 CTCF RAD21 SMC3 ZNF263
5406050
chr19 5048451 rs558413740 C T
BHLHE40 CTCF RAD21 SMC3 ZNF263
5406051
chr19 5048543 rs116087028 C T
CTCF RAD21 SMC3 ZNF263
5406052
chr19 5048580 rs552540998 G A
CTCF RAD21 SMC3 ZNF263
5406053
chr19 5048587 rs370814546 C A
CTCF RAD21 SMC3 ZNF263
5406054
chr19 5048612 rs11339046 GA G
CTCF SMC3 SP1 ZNF263 ZNF740
5406055
chr19 5048613 rs531792261 A G
CTCF SMC3 SP1 ZNF263 ZNF740
5406056
chr19 5048615 rs550368190 G A,C,T
CTCF SMC3 SP1 ZNF263 ZNF740
5406057
chr19 5048616 rs536021031 G A,C,T
CTCF SMC3 SP1 ZNF263 ZNF740
5406058
chr19 5048620 rs372732734 G A,C,T
CTCF E2F4 SP1 ZNF263 ZNF740
5406059
chr19 5048623 rs377003934 G A
CTCF E2F4 SP1 ZNF263
5406060
chr19 5048648 rs373355720 T TA
CTCF TBP ZNF263
5406061
chr19 5048648 rs573721048 T TA
CTCF TBP ZNF263
5406062
chr19 5048676 rs115783641 G A
CTCF FLI1 ZNF263
5406063
Genes possibly regulated by vista28375[chr19:5048305-5048678]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 4969125 5153606 + KDM4B ENSG00000127663.10 4969125 0.71 1.0 16856 20820
Expression level of Genes
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miRNAs possibly regulated by vista28375[chr19:5048305-5048678]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results