EnhancerDB
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  3. vista28385[chr19:5322399-5322569]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28385[chr19:5322399-5322569]
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Tissue distribution of vista28385
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Transcription factor that possibly regulate vista28385[chr19:5322399-5322569]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 5322217 5322708 RUNX3 UCSC Txn Factor no Conserved 108374969
chr19 5322292 5322585 MEF2A UCSC Txn Factor no Conserved 108374980
chr19 5322297 5322574 MEF2C UCSC Txn Factor no Conserved 108374983
chr19 5322335 5322583 EGR1 UCSC Txn Factor no Conserved 108374989
chr19 5322408 5322420 HINFP JASPAR yes 70791940
chr19 5322408 5322420 HINFP JASPAR yes 112229244
chr19 5322409 5322423 CREB3 JASPAR yes 70791941
chr19 5322409 5322423 CREB3L1 JASPAR yes 70791942
chr19 5322409 5322423 CREB3 JASPAR yes 112229245
chr19 5322409 5322423 CREB3L1 JASPAR yes 112229246
chr19 5322410 5322424 XBP1 JASPAR yes 70791943
chr19 5322410 5322424 XBP1 JASPAR yes 112229247
chr19 5322417 5322432 MEF2A JASPAR yes 70791944
chr19 5322417 5322432 MEF2A JASPAR yes 112229248
chr19 5322420 5322430 MEF2A JASPAR yes 70791945
chr19 5322420 5322430 MEF2A JASPAR yes 112229249
chr19 5322421 5322425 YY1 TRANSFAC yes 70791946
chr19 5322421 5322425 YY1 TRANSFAC yes 112229250
chr19 5322431 5322446 MEF2A JASPAR yes 70791947
chr19 5322431 5322446 MEF2A JASPAR yes 112229251
chr19 5322432 5322447 MEF2C JASPAR yes 70791948
chr19 5322432 5322447 MEF2C JASPAR yes 112229252
chr19 5322435 5322439 YY1 TRANSFAC yes 70791949
chr19 5322435 5322439 YY1 TRANSFAC yes 112229253
chr19 5322447 5322457 SREBF1 JASPAR yes 70791950
chr19 5322447 5322457 SREBF1 JASPAR yes 112229254
chr19 5322449 5322459 TBX21 JASPAR yes 70791951
chr19 5322449 5322459 TBX21 JASPAR yes 112229255
chr19 5322449 5322460 TBX2 JASPAR yes 70791952
chr19 5322449 5322460 TBX2 JASPAR yes 112229256
chr19 5322450 5322460 TBR1 JASPAR yes 70791953
chr19 5322450 5322460 TBR1 JASPAR yes 112229257
chr19 5322453 5322474 ZNF263 JASPAR yes 70791954
chr19 5322453 5322474 ZNF263 JASPAR yes 112229258
chr19 5322456 5322477 ZNF263 JASPAR yes 70791955
chr19 5322456 5322477 ZNF263 JASPAR yes 112229259
chr19 5322464 5322475 E2F6 JASPAR yes 70791956
chr19 5322464 5322475 E2F6 JASPAR yes 112229260
chr19 5322465 5322470 SP1 TRANSFAC yes 70791957
chr19 5322465 5322470 SP1 TRANSFAC yes 112229261
chr19 5322469 5322475 PEA3 TRANSFAC yes 70791958
chr19 5322469 5322475 PEA3 TRANSFAC yes 112229262
chr19 5322477 5322489 NHLH1 JASPAR yes 70791959
chr19 5322477 5322489 NHLH1 JASPAR yes 112229263
chr19 5322482 5322491 TFAP2A JASPAR yes 70791960
chr19 5322482 5322491 TFAP2A JASPAR yes 112229264
chr19 5322500 5322510 SP1 JASPAR yes 70791961
chr19 5322500 5322510 SP1 JASPAR yes 112229265
chr19 5322501 5322508 SP1 TRANSFAC yes 70791962
chr19 5322501 5322508 SP1 TRANSFAC yes 112229266
chr19 5322502 5322509 SP1 TRANSFAC yes 70791963
chr19 5322502 5322509 SP1 TRANSFAC yes 112229267
chr19 5322503 5322508 SP1 TRANSFAC yes 70791964
chr19 5322503 5322508 SP1 TRANSFAC yes 112229268
chr19 5322503 5322509 SP1 TRANSFAC yes 70791965
chr19 5322503 5322509 SP1 TRANSFAC yes 112229269
chr19 5322518 5322530 ELF1 JASPAR yes 70791966
chr19 5322518 5322530 ELF4 JASPAR yes 70791967
chr19 5322518 5322530 ELF1 JASPAR yes 112229270
chr19 5322518 5322530 ELF4 JASPAR yes 112229271
chr19 5322525 5322537 INSM1 JASPAR yes 70791968
chr19 5322525 5322537 INSM1 JASPAR yes 112229272
chr19 5322528 5322538 ZNF740 JASPAR yes 70791969
chr19 5322528 5322538 ZNF740 JASPAR yes 112229273
chr19 5322559 5322568 SNAI2 JASPAR yes 70791970
chr19 5322559 5322568 SNAI2 JASPAR yes 112229274
chr19 5322560 5322565 USF2 TRANSFAC yes 70791971
chr19 5322560 5322565 USF2 TRANSFAC yes 112229275
SNP sites on vista28385[chr19:5322399-5322569]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 5322462 rs147017116 C T
EGR1 MEF2A MEF2C RUNX3 ZNF263
5408586
chr19 5322478 rs541996097 A C
EGR1 MEF2A MEF2C NHLH1 RUNX3
5408587
chr19 5322482 rs561977674 A C
EGR1 MEF2A MEF2C NHLH1 RUNX3 TFAP2A
5408588
chr19 5322494 rs185234714 C A,G
EGR1 MEF2A MEF2C RUNX3
5408589
chr19 5322499 rs547505100 C G,T
EGR1 MEF2A MEF2C RUNX3
5408590
chr19 5322513 rs549950375 C A
EGR1 MEF2A MEF2C RUNX3
5408591
chr19 5322518 rs569131853 C T
EGR1 ELF1 ELF4 MEF2A MEF2C RUNX3
5408592
chr19 5322550 rs554790458 A G
EGR1 MEF2A MEF2C RUNX3
5408593
Genes possibly regulated by vista28385[chr19:5322399-5322569]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 5158506 5340814 - PTPRS ENSG00000105426.10 5340814 0.7 1.0 16857 81755
Expression level of Genes
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miRNAs possibly regulated by vista28385[chr19:5322399-5322569]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results