EnhancerDB
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  3. vista28424[chr19:6111447-6111675]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28424[chr19:6111447-6111675]
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Tissue distribution of vista28424
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Transcription factor that possibly regulate vista28424[chr19:6111447-6111675]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 6111350 6111674 SP1 UCSC Txn Factor no Conserved 108377437
chr19 6111433 6111623 IRF1 UCSC Txn Factor no Conserved 108377468
chr19 6111462 6111726 CEBPB UCSC Txn Factor no Conserved 108377476
chr19 6111445 6111449 YY1 TRANSFAC yes 70794109
chr19 6111445 6111449 YY1 TRANSFAC yes 112258952
chr19 6111449 6111463 RORA JASPAR yes 70794110
chr19 6111449 6111463 RORA JASPAR yes 112258953
chr19 6111451 6111461 TFCP2 JASPAR yes 70794111
chr19 6111451 6111461 TFCP2 JASPAR yes 112258954
chr19 6111464 6111469 NFY TRANSFAC yes 70794112
chr19 6111464 6111469 NFY TRANSFAC yes 112258955
chr19 6111466 6111472 NFIC JASPAR yes 70794113
chr19 6111466 6111472 NFIC JASPAR yes 112258956
chr19 6111486 6111490 ESR1 TRANSFAC yes 70794114
chr19 6111486 6111490 ESR1 TRANSFAC yes 112258957
chr19 6111508 6111519 FOXB1 JASPAR yes 70794115
chr19 6111508 6111519 FOXC1 JASPAR yes 70794116
chr19 6111508 6111519 FOXB1 JASPAR yes 112258958
chr19 6111508 6111519 FOXC1 JASPAR yes 112258959
chr19 6111508 6111520 FOXC2 JASPAR yes 70794117
chr19 6111508 6111520 FOXC2 JASPAR yes 112258960
chr19 6111520 6111530 HOXA13 JASPAR yes 70794118
chr19 6111520 6111530 HOXB13 JASPAR yes 70794119
chr19 6111520 6111530 HOXD13 JASPAR yes 70794120
chr19 6111520 6111530 HOXA13 JASPAR yes 112258961
chr19 6111520 6111530 HOXB13 JASPAR yes 112258962
chr19 6111520 6111530 HOXD13 JASPAR yes 112258963
chr19 6111526 6111540 TLX1 JASPAR yes 70794121
chr19 6111526 6111540 TLX1 JASPAR yes 112258964
chr19 6111539 6111544 SP1 TRANSFAC yes 70794122
chr19 6111539 6111544 SP1 TRANSFAC yes 112258965
chr19 6111544 6111548 YY1 TRANSFAC yes 70794123
chr19 6111544 6111548 YY1 TRANSFAC yes 112258966
chr19 6111544 6111559 STAT1 JASPAR yes 70794124
chr19 6111544 6111559 STAT1 JASPAR yes 112258967
chr19 6111545 6111553 FEV JASPAR yes 70794125
chr19 6111545 6111553 FEV JASPAR yes 112258968
chr19 6111546 6111557 STAT1 JASPAR yes 70794126
chr19 6111546 6111557 STAT1 JASPAR yes 112258969
chr19 6111547 6111552 ETS2 TRANSFAC yes 70794127
chr19 6111547 6111552 ETS2 TRANSFAC yes 112258970
chr19 6111585 6111590 SP1 TRANSFAC yes 70794128
chr19 6111585 6111590 SP1 TRANSFAC yes 112258971
chr19 6111600 6111610 CEBPB JASPAR yes 70794129
chr19 6111600 6111610 CEBPD JASPAR yes 70794130
chr19 6111600 6111610 CEBPE JASPAR yes 70794131
chr19 6111600 6111610 CEBPG JASPAR yes 70794132
chr19 6111600 6111610 CEBPB JASPAR yes 112258972
chr19 6111600 6111610 CEBPD JASPAR yes 112258973
chr19 6111600 6111610 CEBPE JASPAR yes 112258974
chr19 6111600 6111610 CEBPG JASPAR yes 112258975
chr19 6111607 6111625 NR3C1 JASPAR yes 70794133
chr19 6111607 6111625 NR3C1 JASPAR yes 112258976
chr19 6111637 6111648 FOXB1 JASPAR yes 70794134
chr19 6111637 6111648 FOXC1 JASPAR yes 70794135
chr19 6111637 6111648 FOXB1 JASPAR yes 112258977
chr19 6111637 6111648 FOXC1 JASPAR yes 112258978
chr19 6111638 6111642 YY1 TRANSFAC yes 70794136
chr19 6111638 6111642 YY1 TRANSFAC yes 112258979
chr19 6111650 6111654 H4TF2 TRANSFAC yes 70794137
chr19 6111650 6111654 H4TF2 TRANSFAC yes 112258980
chr19 6111670 6111676 NFIC JASPAR yes 70794138
chr19 6111670 6111676 NFIC JASPAR yes 112258981
SNP sites on vista28424[chr19:6111447-6111675]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 6111486 rs73923451 G A
CEBPB ESR1 IRF1 SP1
5412679
chr19 6111576 rs75712946 G C
CEBPB IRF1 SP1
5412680
chr19 6111628 rs9636181 G A
CEBPB SP1
5412681
Genes possibly regulated by vista28424[chr19:6111447-6111675]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 5993175 6199583 - RFX2 ENSG00000087903.8 6199583 0.76 1.0 16879 12092
chr19 6135258 6193112 + ACSBG2 ENSG00000130377.9 6135258 0.93 1.0 16880 76417
Expression level of Genes
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miRNAs possibly regulated by vista28424[chr19:6111447-6111675]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results