EnhancerDB
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  3. vista28428[chr19:6238228-6238618]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28428[chr19:6238228-6238618]
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Tissue distribution of vista28428
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Transcription factor that possibly regulate vista28428[chr19:6238228-6238618]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 6238093 6238714 GATA2 UCSC Txn Factor no Conserved 108377513
chr19 6238150 6238599 GATA1 UCSC Txn Factor no Conserved 108377520
chr19 6238290 6238294 LFA1 TRANSFAC yes 70794235
chr19 6238290 6238294 LFA1 TRANSFAC yes 112262704
chr19 6238291 6238301 TFE3 JASPAR yes 70794236
chr19 6238291 6238301 TFEB JASPAR yes 70794237
chr19 6238291 6238301 TFEC JASPAR yes 70794238
chr19 6238291 6238301 TFE3 JASPAR yes 112262705
chr19 6238291 6238301 TFEB JASPAR yes 112262706
chr19 6238291 6238301 TFEC JASPAR yes 112262707
chr19 6238291 6238302 USF1 JASPAR yes 70794239
chr19 6238291 6238302 USF2 JASPAR yes 70794240
chr19 6238291 6238302 USF1 JASPAR yes 112262708
chr19 6238291 6238302 USF2 JASPAR yes 112262709
chr19 6238303 6238318 HNF1A JASPAR yes 70794241
chr19 6238303 6238318 HNF1A JASPAR yes 112262710
chr19 6238304 6238317 HNF1B JASPAR yes 70794242
chr19 6238304 6238317 HNF1B JASPAR yes 112262711
chr19 6238308 6238324 POU4F2 JASPAR yes 70794243
chr19 6238308 6238324 POU4F2 JASPAR yes 112262712
chr19 6238309 6238325 POU4F3 JASPAR yes 70794244
chr19 6238309 6238325 POU4F3 JASPAR yes 112262713
chr19 6238311 6238325 POU4F1 JASPAR yes 70794245
chr19 6238311 6238325 POU4F1 JASPAR yes 112262714
chr19 6238311 6238326 HNF1A JASPAR yes 70794246
chr19 6238311 6238326 HNF1A JASPAR yes 112262715
chr19 6238312 6238325 HNF1B JASPAR yes 70794247
chr19 6238312 6238325 HNF1B JASPAR yes 112262716
chr19 6238324 6238328 H1TF2 TRANSFAC yes 70794248
chr19 6238324 6238328 NFE TRANSFAC yes 70794249
chr19 6238324 6238328 SRF TRANSFAC yes 70794250
chr19 6238324 6238328 H1TF2 TRANSFAC yes 112262717
chr19 6238324 6238328 NFE TRANSFAC yes 112262718
chr19 6238324 6238328 SRF TRANSFAC yes 112262719
chr19 6238324 6238341 BCL6B JASPAR yes 70794251
chr19 6238324 6238341 BCL6B JASPAR yes 112262720
chr19 6238336 6238351 SOX21 JASPAR yes 70794252
chr19 6238336 6238351 SOX21 JASPAR yes 112262721
chr19 6238341 6238356 RUNX2 JASPAR yes 70794253
chr19 6238341 6238356 RUNX2 JASPAR yes 112262722
chr19 6238344 6238355 RUNX1 JASPAR yes 70794254
chr19 6238344 6238355 RUNX1 JASPAR yes 112262723
chr19 6238345 6238355 RUNX3 JASPAR yes 70794255
chr19 6238345 6238355 RUNX3 JASPAR yes 112262724
chr19 6238346 6238355 RUNX2 JASPAR yes 70794256
chr19 6238346 6238355 RUNX2 JASPAR yes 112262725
chr19 6238359 6238365 TCF4 TRANSFAC yes 70794257
chr19 6238359 6238365 TCF4 TRANSFAC yes 112262726
chr19 6238359 6238374 MEF2C JASPAR yes 70794258
chr19 6238359 6238374 MEF2C JASPAR yes 112262727
chr19 6238369 6238383 GATA2 JASPAR yes 70794259
chr19 6238369 6238383 GATA2 JASPAR yes 112262728
chr19 6238373 6238381 GATA3 JASPAR yes 70794260
chr19 6238373 6238381 GATA5 JASPAR yes 70794261
chr19 6238373 6238381 GATA3 JASPAR yes 112262729
chr19 6238373 6238381 GATA5 JASPAR yes 112262730
chr19 6238388 6238401 ELF1 JASPAR yes 70794262
chr19 6238388 6238401 ELF1 JASPAR yes 112262731
chr19 6238389 6238401 EHF JASPAR yes 70794263
chr19 6238389 6238401 EHF JASPAR yes 112262732
chr19 6238389 6238402 ELF3 JASPAR yes 70794264
chr19 6238389 6238402 ELF3 JASPAR yes 112262733
chr19 6238390 6238401 ELF5 JASPAR yes 70794265
chr19 6238390 6238401 ETV2 JASPAR yes 70794266
chr19 6238390 6238401 ELF5 JASPAR yes 112262734
chr19 6238390 6238401 ETV2 JASPAR yes 112262735
chr19 6238391 6238402 FLI1 JASPAR yes 70794267
chr19 6238391 6238402 FLI1 JASPAR yes 112262736
chr19 6238392 6238400 FEV JASPAR yes 70794268
chr19 6238392 6238400 FEV JASPAR yes 112262737
chr19 6238398 6238411 POU3F3 JASPAR yes 70794269
chr19 6238398 6238411 POU3F3 JASPAR yes 112262738
chr19 6238493 6238513 RREB1 JASPAR yes 70794270
chr19 6238493 6238513 RREB1 JASPAR yes 112262739
chr19 6238495 6238516 ZNF263 JASPAR yes 70794271
chr19 6238495 6238516 ZNF263 JASPAR yes 112262740
chr19 6238501 6238511 SP1 JASPAR yes 70794272
chr19 6238501 6238511 SP1 JASPAR yes 112262741
chr19 6238504 6238509 SP1 TRANSFAC yes 70794273
chr19 6238504 6238509 SP1 TRANSFAC yes 112262742
chr19 6238505 6238515 ZNF740 JASPAR yes 70794274
chr19 6238505 6238515 ZNF740 JASPAR yes 112262743
chr19 6238508 6238515 SP1 TRANSFAC yes 70794275
chr19 6238508 6238515 SP1 TRANSFAC yes 112262744
chr19 6238510 6238515 SP1 TRANSFAC yes 70794276
chr19 6238510 6238515 SP1 TRANSFAC yes 112262745
chr19 6238549 6238563 ATF7 JASPAR yes 70794277
chr19 6238549 6238563 BATF3 JASPAR yes 70794278
chr19 6238549 6238563 ATF7 JASPAR yes 112262746
chr19 6238549 6238563 BATF3 JASPAR yes 112262747
chr19 6238550 6238562 JDP2 JASPAR yes 70794279
chr19 6238550 6238562 JDP2 JASPAR yes 112262748
chr19 6238550 6238565 JUND JASPAR yes 70794280
chr19 6238550 6238565 JUND JASPAR yes 112262749
chr19 6238551 6238564 JUN JASPAR yes 70794281
chr19 6238551 6238564 JUN JASPAR yes 112262750
chr19 6238552 6238559 JUN TRANSFAC yes 70794282
chr19 6238552 6238559 JUN TRANSFAC yes 112262751
chr19 6238552 6238560 CREB1 JASPAR yes 70794283
chr19 6238552 6238560 GMEB2 JASPAR yes 70794284
chr19 6238552 6238560 CREB1 JASPAR yes 112262752
chr19 6238552 6238560 GMEB2 JASPAR yes 112262753
chr19 6238554 6238559 ATF1 TRANSFAC yes 70794285
chr19 6238554 6238559 ATF1 TRANSFAC yes 112262754
chr19 6238585 6238593 GATA3 JASPAR yes 70794286
chr19 6238585 6238593 GATA3 JASPAR yes 112262755
chr19 6238598 6238612 TLX1 JASPAR yes 70794287
chr19 6238598 6238612 TLX1 JASPAR yes 112262756
chr19 6238610 6238623 SMAD2 JASPAR yes 70794288
chr19 6238610 6238623 SMAD2 JASPAR yes 112262757
chr19 6238615 6238627 PKNOX1 JASPAR yes 70794289
chr19 6238615 6238627 PKNOX2 JASPAR yes 70794290
chr19 6238615 6238627 TGIF1 JASPAR yes 70794291
chr19 6238615 6238627 TGIF2 JASPAR yes 70794292
chr19 6238615 6238627 PKNOX1 JASPAR yes 112262758
chr19 6238615 6238627 PKNOX2 JASPAR yes 112262759
chr19 6238615 6238627 TGIF1 JASPAR yes 112262760
chr19 6238615 6238627 TGIF2 JASPAR yes 112262761
SNP sites on vista28428[chr19:6238228-6238618]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 6238414 rs1865061 T A,C
GATA1 GATA2
5413426
Genes possibly regulated by vista28428[chr19:6238228-6238618]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 5993175 6199583 - RFX2 ENSG00000087903.8 6199583 0.76 1.0 16879 61355
chr19 6212966 6279959 - MLLT1 ENSG00000130382.7 6279959 0.68 1.0 16881 58659
chr19 6306153 6333640 - ACER1 ENSG00000167769.4 6333640 0.95 1.0 16882 4978
Expression level of Genes
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miRNAs possibly regulated by vista28428[chr19:6238228-6238618]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results