EnhancerDB
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  3. vista28443[chr19:6587274-6587651]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28443[chr19:6587274-6587651]
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Tissue distribution of vista28443
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Transcription factor that possibly regulate vista28443[chr19:6587274-6587651]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 6586848 6589302 POLR2A UCSC Txn Factor no Conserved 108378825
chr19 6586848 6589302 POLR2A UCSC Txn Factor no Conserved 108378826
chr19 6586848 6589302 POLR2A UCSC Txn Factor no Conserved 108378827
chr19 6587184 6587621 CHD1 UCSC Txn Factor no Conserved 108378899
chr19 6587224 6587662 CTBP2 UCSC Txn Factor no Conserved 108378907
chr19 6587335 6587556 EGR1 UCSC Txn Factor no Conserved 108378919
chr19 6587336 6587648 BHLHE40 UCSC Txn Factor no Conserved 108378921
chr19 6587412 6587714 EBF1 UCSC Txn Factor no Conserved 108378930
chr19 6587271 6587286 PRDM1 JASPAR yes 70794996
chr19 6587271 6587286 PRDM1 JASPAR yes 112278806
chr19 6587280 6587295 ZBTB33 JASPAR yes 70794997
chr19 6587280 6587295 ZBTB33 JASPAR yes 112278807
chr19 6587283 6587304 ZNF263 JASPAR yes 70794998
chr19 6587283 6587304 ZNF263 JASPAR yes 112278808
chr19 6587321 6587336 PRDM1 JASPAR yes 70794999
chr19 6587321 6587336 PRDM1 JASPAR yes 112278809
chr19 6587326 6587347 ZNF263 JASPAR yes 70795000
chr19 6587326 6587347 ZNF263 JASPAR yes 112278810
chr19 6587333 6587348 PRDM1 JASPAR yes 70795001
chr19 6587333 6587348 PRDM1 JASPAR yes 112278811
chr19 6587500 6587513 SMAD2 JASPAR yes 70795002
chr19 6587500 6587513 SMAD2 JASPAR yes 112278812
chr19 6587504 6587517 SMAD2 JASPAR yes 70795003
chr19 6587504 6587517 SMAD2 JASPAR yes 112278813
chr19 6587510 6587525 ZBTB33 JASPAR yes 70795004
chr19 6587510 6587525 ZBTB33 JASPAR yes 112278814
chr19 6587518 6587531 SMAD2 JASPAR yes 70795005
chr19 6587518 6587531 SMAD2 JASPAR yes 112278815
chr19 6587528 6587539 NRF1 JASPAR yes 70795006
chr19 6587528 6587539 NRF1 JASPAR yes 112278816
chr19 6587528 6587540 HINFP JASPAR yes 70795007
chr19 6587528 6587540 HINFP JASPAR yes 112278817
chr19 6587565 6587576 NFKB1 JASPAR yes 70795008
chr19 6587565 6587576 NFKB1 JASPAR yes 112278818
chr19 6587566 6587576 NFKB1 JASPAR yes 70795009
chr19 6587566 6587576 NFKB1 JASPAR yes 112278819
chr19 6587569 6587584 TFAP2C JASPAR yes 70795010
chr19 6587569 6587584 TFAP2C JASPAR yes 112278820
chr19 6587570 6587584 EBF1 JASPAR yes 70795011
chr19 6587570 6587584 EBF1 JASPAR yes 112278821
chr19 6587571 6587585 EBF1 JASPAR yes 70795012
chr19 6587571 6587585 EBF1 JASPAR yes 112278822
chr19 6587572 6587578 MZF1 JASPAR yes 70795013
chr19 6587572 6587578 MZF1 JASPAR yes 112278823
chr19 6587572 6587583 EBF1 JASPAR yes 70795014
chr19 6587572 6587583 EBF1 JASPAR yes 112278824
chr19 6587573 6587584 EBF1 JASPAR yes 70795015
chr19 6587573 6587584 EBF1 JASPAR yes 112278825
chr19 6587593 6587597 ESR1 TRANSFAC yes 70795016
chr19 6587593 6587597 ESR1 TRANSFAC yes 112278826
chr19 6587594 6587604 TBX21 JASPAR yes 70795017
chr19 6587594 6587604 TBX21 JASPAR yes 112278827
chr19 6587595 6587603 MGA JASPAR yes 70795018
chr19 6587595 6587603 TBX15 JASPAR yes 70795019
chr19 6587595 6587603 TBX1 JASPAR yes 70795020
chr19 6587595 6587603 TBX4 JASPAR yes 70795021
chr19 6587595 6587603 TBX5 JASPAR yes 70795022
chr19 6587595 6587603 MGA JASPAR yes 112278828
chr19 6587595 6587603 TBX15 JASPAR yes 112278829
chr19 6587595 6587603 TBX1 JASPAR yes 112278830
chr19 6587595 6587603 TBX4 JASPAR yes 112278831
chr19 6587595 6587603 TBX5 JASPAR yes 112278832
chr19 6587607 6587618 CDX2 JASPAR yes 70795023
chr19 6587607 6587618 CDX2 JASPAR yes 112278833
chr19 6587608 6587619 HOXA10 JASPAR yes 70795024
chr19 6587608 6587619 HOXA10 JASPAR yes 112278834
chr19 6587609 6587613 H1TF2 TRANSFAC yes 70795025
chr19 6587609 6587613 NFE TRANSFAC yes 70795026
chr19 6587609 6587613 SRF TRANSFAC yes 70795027
chr19 6587609 6587613 H1TF2 TRANSFAC yes 112278835
chr19 6587609 6587613 NFE TRANSFAC yes 112278836
chr19 6587609 6587613 SRF TRANSFAC yes 112278837
chr19 6587609 6587618 CDX1 JASPAR yes 70795028
chr19 6587609 6587618 CDX1 JASPAR yes 112278838
chr19 6587609 6587619 HOXA13 JASPAR yes 70795029
chr19 6587609 6587619 HOXB13 JASPAR yes 70795030
chr19 6587609 6587619 HOXD13 JASPAR yes 70795031
chr19 6587609 6587619 HOXA13 JASPAR yes 112278839
chr19 6587609 6587619 HOXB13 JASPAR yes 112278840
chr19 6587609 6587619 HOXD13 JASPAR yes 112278841
chr19 6587636 6587651 FOXP1 JASPAR yes 70795032
chr19 6587636 6587651 FOXP1 JASPAR yes 112278842
chr19 6587637 6587652 FOXP1 JASPAR yes 70795033
chr19 6587637 6587652 FOXP1 JASPAR yes 112278843
SNP sites on vista28443[chr19:6587274-6587651]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 6587278 rs201538635 TGA T
CHD1 CTBP2 POLR2A PRDM1
5415671
chr19 6587278 rs371350397 TGA T
CHD1 CTBP2 POLR2A PRDM1
5415672
chr19 6587346 rs146592020 T A
BHLHE40 CHD1 CTBP2 EGR1 POLR2A PRDM1 ZNF263
5415673
chr19 6587404 rs34786523 A G
BHLHE40 CHD1 CTBP2 EGR1 POLR2A
5415674
chr19 6587491 rs116982304 G C
BHLHE40 CHD1 CTBP2 EBF1 EGR1 POLR2A
5415675
chr19 6587584 rs76696740 C T
BHLHE40 CHD1 CTBP2 EBF1 POLR2A TFAP2C
5415676
chr19 6587623 rs527847227 T C
BHLHE40 CTBP2 EBF1 POLR2A
5415677
chr19 6587637 rs35792677 C CT
BHLHE40 CTBP2 EBF1 FOXP1 POLR2A
5415678
chr19 6587637 rs397859264 C CT
BHLHE40 CTBP2 EBF1 FOXP1 POLR2A
5415679
chr19 6587651 rs540196824 CT C
CTBP2 EBF1 FOXP1 POLR2A
5415680
Genes possibly regulated by vista28443[chr19:6587274-6587651]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 6494330 6502859 - TUBB4A ENSG00000104833.6 6502859 0.97 1.0 16892 15585
chr19 6531010 6535931 + TNFSF9 ENSG00000125657.3 6531010 0.91 1.0 16893 43736
chr19 6583194 6604114 - CD70 ENSG00000125726.6 6604114 1.0 0.95 16894 83537
chr19 6663148 6670599 - TNFSF14 ENSG00000125735.6 6670599 0.95 0.94 16895 17052
Expression level of Genes
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miRNAs possibly regulated by vista28443[chr19:6587274-6587651]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results