EnhancerDB
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  3. vista28463[chr19:6803169-6803390]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28463[chr19:6803169-6803390]
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Tissue distribution of vista28463
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Transcription factor that possibly regulate vista28463[chr19:6803169-6803390]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 6801247 6803432 POLR2A UCSC Txn Factor no Conserved 108380191
chr19 6801247 6803432 POLR2A UCSC Txn Factor no Conserved 108380192
chr19 6801247 6803432 POLR2A UCSC Txn Factor no Conserved 108380193
chr19 6803150 6803468 POU2F2 UCSC Txn Factor no Conserved 108380406
chr19 6803167 6803181 IRF7 JASPAR yes 70796105
chr19 6803167 6803181 IRF7 JASPAR yes 112291890
chr19 6803168 6803183 PRDM1 JASPAR yes 70796106
chr19 6803168 6803183 PRDM1 JASPAR yes 112291891
chr19 6803170 6803184 RXRB JASPAR yes 70796107
chr19 6803170 6803184 RXRB JASPAR yes 112291892
chr19 6803190 6803195 MYC TRANSFAC yes 70796108
chr19 6803190 6803195 MYC TRANSFAC yes 112291893
chr19 6803269 6803275 LEF1 TRANSFAC yes 70796109
chr19 6803269 6803275 SOX10 JASPAR yes 70796110
chr19 6803269 6803275 LEF1 TRANSFAC yes 112291894
chr19 6803269 6803275 SOX10 JASPAR yes 112291895
chr19 6803281 6803291 ALX3 JASPAR yes 70796111
chr19 6803281 6803291 GSX2 JASPAR yes 70796112
chr19 6803281 6803291 MNX1 JASPAR yes 70796113
chr19 6803281 6803291 ALX3 JASPAR yes 112291896
chr19 6803281 6803291 GSX2 JASPAR yes 112291897
chr19 6803281 6803291 MNX1 JASPAR yes 112291898
chr19 6803282 6803290 LMX1A JASPAR yes 70796114
chr19 6803282 6803290 LMX1B JASPAR yes 70796115
chr19 6803282 6803290 NKX6-1 JASPAR yes 70796116
chr19 6803282 6803290 NKX6-2 JASPAR yes 70796117
chr19 6803282 6803290 VAX1 JASPAR yes 70796118
chr19 6803282 6803290 VAX2 JASPAR yes 70796119
chr19 6803282 6803290 VSX1 JASPAR yes 70796120
chr19 6803282 6803290 VSX2 JASPAR yes 70796121
chr19 6803282 6803290 LMX1A JASPAR yes 112291899
chr19 6803282 6803290 LMX1B JASPAR yes 112291900
chr19 6803282 6803290 NKX6-1 JASPAR yes 112291901
chr19 6803282 6803290 NKX6-2 JASPAR yes 112291902
chr19 6803282 6803290 VAX1 JASPAR yes 112291903
chr19 6803282 6803290 VAX2 JASPAR yes 112291904
chr19 6803282 6803290 VSX1 JASPAR yes 112291905
chr19 6803282 6803290 VSX2 JASPAR yes 112291906
chr19 6803287 6803299 POU2F1 JASPAR yes 70796122
chr19 6803287 6803299 POU2F1 JASPAR yes 112291907
chr19 6803287 6803300 POU3F3 JASPAR yes 70796123
chr19 6803287 6803300 POU3F3 JASPAR yes 112291908
chr19 6803287 6803301 POU1F1 JASPAR yes 70796124
chr19 6803287 6803301 POU1F1 JASPAR yes 112291909
chr19 6803288 6803300 POU3F1 JASPAR yes 70796125
chr19 6803288 6803300 POU3F2 JASPAR yes 70796126
chr19 6803288 6803300 POU3F1 JASPAR yes 112291910
chr19 6803288 6803300 POU3F2 JASPAR yes 112291911
chr19 6803288 6803301 POU2F2 JASPAR yes 70796127
chr19 6803288 6803301 POU2F2 JASPAR yes 112291912
chr19 6803289 6803297 POU2F1 TRANSFAC yes 70796128
chr19 6803289 6803297 POU2F1 TRANSFAC yes 112291913
chr19 6803289 6803298 POU3F4 JASPAR yes 70796129
chr19 6803289 6803298 POU5F1B JASPAR yes 70796130
chr19 6803289 6803298 POU3F4 JASPAR yes 112291914
chr19 6803289 6803298 POU5F1B JASPAR yes 112291915
chr19 6803290 6803297 POU2F1 TRANSFAC yes 70796131
chr19 6803290 6803297 POU2F2 TRANSFAC yes 70796132
chr19 6803290 6803297 POU2F1 TRANSFAC yes 112291916
chr19 6803290 6803297 POU2F2 TRANSFAC yes 112291917
chr19 6803299 6803320 MAFG JASPAR yes 70796133
chr19 6803299 6803320 MAFG JASPAR yes 112291918
chr19 6803302 6803306 LFA1 TRANSFAC yes 70796134
chr19 6803302 6803306 LFA1 TRANSFAC yes 112291919
chr19 6803308 6803320 POU2F1 JASPAR yes 70796135
chr19 6803308 6803320 POU2F1 JASPAR yes 112291920
chr19 6803308 6803321 POU3F3 JASPAR yes 70796136
chr19 6803308 6803321 POU3F3 JASPAR yes 112291921
chr19 6803308 6803322 POU1F1 JASPAR yes 70796137
chr19 6803308 6803322 POU1F1 JASPAR yes 112291922
chr19 6803309 6803321 POU3F1 JASPAR yes 70796138
chr19 6803309 6803321 POU3F2 JASPAR yes 70796139
chr19 6803309 6803321 POU3F1 JASPAR yes 112291923
chr19 6803309 6803321 POU3F2 JASPAR yes 112291924
chr19 6803309 6803322 POU2F2 JASPAR yes 70796140
chr19 6803309 6803322 POU2F2 JASPAR yes 112291925
chr19 6803310 6803318 POU2F1 TRANSFAC yes 70796141
chr19 6803310 6803318 POU2F1 TRANSFAC yes 112291926
chr19 6803310 6803319 POU3F4 JASPAR yes 70796142
chr19 6803310 6803319 POU5F1B JASPAR yes 70796143
chr19 6803310 6803319 POU3F4 JASPAR yes 112291927
chr19 6803310 6803319 POU5F1B JASPAR yes 112291928
chr19 6803311 6803318 POU2F1 TRANSFAC yes 70796144
chr19 6803311 6803318 POU2F2 TRANSFAC yes 70796145
chr19 6803311 6803318 POU2F1 TRANSFAC yes 112291929
chr19 6803311 6803318 POU2F2 TRANSFAC yes 112291930
chr19 6803316 6803331 STAT1 JASPAR yes 70796146
chr19 6803316 6803331 STAT1 JASPAR yes 112291931
chr19 6803318 6803329 STAT1 JASPAR yes 70796147
chr19 6803318 6803329 STAT3 JASPAR yes 70796148
chr19 6803318 6803329 STAT1 JASPAR yes 112291932
chr19 6803318 6803329 STAT3 JASPAR yes 112291933
chr19 6803336 6803339 MYB TRANSFAC yes 70796149
chr19 6803336 6803339 MYB TRANSFAC yes 112291934
chr19 6803336 6803349 ELF3 JASPAR yes 70796150
chr19 6803336 6803349 ELF3 JASPAR yes 112291935
chr19 6803352 6803371 RFX2 JASPAR yes 70796151
chr19 6803352 6803371 RFX2 JASPAR yes 112291936
chr19 6803353 6803357 ESR1 TRANSFAC yes 70796152
chr19 6803353 6803357 ESR1 TRANSFAC yes 112291937
chr19 6803356 6803372 RFX5 JASPAR yes 70796153
chr19 6803356 6803372 RFX5 JASPAR yes 112291938
chr19 6803357 6803371 EBF1 JASPAR yes 70796154
chr19 6803357 6803371 EBF1 JASPAR yes 112291939
chr19 6803388 6803404 RFX2 JASPAR yes 70796155
chr19 6803388 6803404 RFX5 JASPAR yes 70796156
chr19 6803388 6803404 RFX2 JASPAR yes 112291940
chr19 6803388 6803404 RFX5 JASPAR yes 112291941
SNP sites on vista28463[chr19:6803169-6803390]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 6803188 rs145344098 CG C
POLR2A POU2F2
5417894
chr19 6803215 rs531909724 C G
POLR2A POU2F2
5417895
chr19 6803221 rs12232825 A G
POLR2A POU2F2
5417896
chr19 6803250 rs12232870 G A
POLR2A POU2F2
5417897
chr19 6803270 rs8109794 C A,T
LEF1 POLR2A POU2F2 SOX10
5417898
Genes possibly regulated by vista28463[chr19:6803169-6803390]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 6677715 6730573 - C3 ENSG00000125730.12 6730573 0.98 0.96 16896 27404
chr19 6729925 6737614 - GPR108 ENSG00000125734.9 6737614 0.57 1.0 16897 34445
chr19 6737936 6751537 + TRIP10 ENSG00000125733.13 6737936 0.72 1.0 16898 34767
chr19 6752171 6767599 - SH2D3A ENSG00000125731.8 6767599 0.7 1.0 16899 64430
chr19 6772725 6857377 + VAV1 ENSG00000141968.3 6772725 0.9 1.0 16900 69556
chr19 6887577 6940470 + EMR1 ENSG00000174837.10 6887577 0.96 0.95 16901 15813
Expression level of Genes
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miRNAs possibly regulated by vista28463[chr19:6803169-6803390]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results