EnhancerDB
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  3. vista28560[chr19:10138488-10138727]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28560[chr19:10138488-10138727]
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Tissue distribution of vista28560
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Transcription factor that possibly regulate vista28560[chr19:10138488-10138727]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 10138105 10138715 E2F1 UCSC Txn Factor no Conserved 108382726
chr19 10138277 10138877 MYC UCSC Txn Factor no Conserved 108382734
chr19 10138320 10138756 MAZ UCSC Txn Factor no Conserved 108382741
chr19 10138330 10138768 MXI1 UCSC Txn Factor no Conserved 108382746
chr19 10138376 10138812 MAX UCSC Txn Factor no Conserved 108382761
chr19 10138383 10138655 TEAD4 UCSC Txn Factor no Conserved 108382764
chr19 10138388 10138793 CTCF UCSC Txn Factor no Conserved 108382769
chr19 10138418 10138706 RAD21 UCSC Txn Factor no Conserved 108382789
chr19 10138433 10138707 SMC3 UCSC Txn Factor no Conserved 108382798
chr19 10138447 10138730 USF1 UCSC Txn Factor no Conserved 108382806
chr19 10138486 10138497 E2F6 JASPAR yes 70801031
chr19 10138486 10138497 E2F6 JASPAR yes 112405750
chr19 10138500 10138515 SOX21 JASPAR yes 70801032
chr19 10138500 10138515 SOX21 JASPAR yes 112405751
chr19 10138500 10138516 SOX4 JASPAR yes 70801033
chr19 10138500 10138516 SOX4 JASPAR yes 112405752
chr19 10138506 10138518 TEAD1 JASPAR yes 70801034
chr19 10138506 10138518 TEAD1 JASPAR yes 112405753
chr19 10138507 10138515 TEAD3 JASPAR yes 70801035
chr19 10138507 10138515 TEAD3 JASPAR yes 112405754
chr19 10138515 10138523 SP1 TRANSFAC yes 70801036
chr19 10138515 10138523 SP1 TRANSFAC yes 112405755
chr19 10138515 10138525 SP1 JASPAR yes 70801037
chr19 10138515 10138525 SP1 JASPAR yes 112405756
chr19 10138517 10138523 MAZ TRANSFAC yes 70801038
chr19 10138517 10138523 MAZ TRANSFAC yes 112405757
chr19 10138521 10138526 SP1 TRANSFAC yes 70801039
chr19 10138521 10138526 SP1 TRANSFAC yes 112405758
chr19 10138522 10138536 MTF1 JASPAR yes 70801040
chr19 10138522 10138536 MTF1 JASPAR yes 112405759
chr19 10138529 10138541 NHLH1 JASPAR yes 70801041
chr19 10138529 10138541 NHLH1 JASPAR yes 112405760
chr19 10138530 10138540 NHLH1 JASPAR yes 70801042
chr19 10138530 10138540 NHLH1 JASPAR yes 112405761
chr19 10138535 10138544 THAP1 JASPAR yes 70801043
chr19 10138535 10138544 THAP1 JASPAR yes 112405762
chr19 10138544 10138556 TFAP2B JASPAR yes 70801044
chr19 10138544 10138556 TFAP2C JASPAR yes 70801045
chr19 10138544 10138556 TFAP2B JASPAR yes 112405763
chr19 10138544 10138556 TFAP2C JASPAR yes 112405764
chr19 10138544 10138559 TFAP2A JASPAR yes 70801046
chr19 10138544 10138559 TFAP2A JASPAR yes 112405765
chr19 10138545 10138556 TFAP2A JASPAR yes 70801047
chr19 10138545 10138556 TFAP2B JASPAR yes 70801048
chr19 10138545 10138556 TFAP2C JASPAR yes 70801049
chr19 10138545 10138556 TFAP2A JASPAR yes 112405766
chr19 10138545 10138556 TFAP2B JASPAR yes 112405767
chr19 10138545 10138556 TFAP2C JASPAR yes 112405768
chr19 10138559 10138578 CTCF JASPAR yes 70801050
chr19 10138559 10138578 CTCF JASPAR yes 112405769
chr19 10138585 10138603 ESR1 JASPAR yes 70801051
chr19 10138585 10138603 ESR1 JASPAR yes 112405770
chr19 10138587 10138597 MAX JASPAR yes 70801052
chr19 10138587 10138597 MAX JASPAR yes 112405771
chr19 10138587 10138598 USF1 JASPAR yes 70801053
chr19 10138587 10138598 USF1 JASPAR yes 112405772
chr19 10138588 10138598 MNT JASPAR yes 70801054
chr19 10138588 10138598 MNT JASPAR yes 112405773
chr19 10138589 10138596 USF1 JASPAR yes 70801055
chr19 10138589 10138596 USF1 JASPAR yes 112405774
chr19 10138590 10138595 MYC TRANSFAC yes 70801056
chr19 10138590 10138595 USF1 TRANSFAC yes 70801057
chr19 10138590 10138595 USF2 TRANSFAC yes 70801058
chr19 10138590 10138595 MYC TRANSFAC yes 112405775
chr19 10138590 10138595 USF1 TRANSFAC yes 112405776
chr19 10138590 10138595 USF2 TRANSFAC yes 112405777
chr19 10138590 10138597 USF1 JASPAR yes 70801059
chr19 10138590 10138597 USF1 JASPAR yes 112405778
chr19 10138631 10138635 NFE TRANSFAC yes 70801060
chr19 10138631 10138635 NFE TRANSFAC yes 112405779
chr19 10138637 10138655 ESR2 JASPAR yes 70801061
chr19 10138637 10138655 ESR2 JASPAR yes 112405780
chr19 10138639 10138659 ESR1 JASPAR yes 70801062
chr19 10138639 10138659 ESR1 JASPAR yes 112405781
chr19 10138669 10138679 MZF1 JASPAR yes 70801063
chr19 10138669 10138679 MZF1 JASPAR yes 112405782
chr19 10138698 10138709 SPDEF JASPAR yes 70801064
chr19 10138698 10138709 SPDEF JASPAR yes 112405783
chr19 10138700 10138705 GATA2 JASPAR yes 70801065
chr19 10138700 10138705 GATA2 JASPAR yes 112405784
chr19 10138726 10138741 SOX21 JASPAR yes 70801066
chr19 10138726 10138741 SOX21 JASPAR yes 112405785
SNP sites on vista28560[chr19:10138488-10138727]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 10138490 rs28493163 T C
CTCF E2F1 E2F6 MAX MAZ MXI1 MYC RAD21 SMC3 TEAD4 USF1
5434221
chr19 10138626 rs114540256 A C
CTCF E2F1 MAX MAZ MXI1 MYC RAD21 SMC3 TEAD4 USF1
5434222
chr19 10138656 rs141075150 G A
CTCF E2F1 ESR1 MAX MAZ MXI1 MYC RAD21 SMC3 USF1
5434223
chr19 10138675 rs73925229 C G
CTCF E2F1 MAX MAZ MXI1 MYC MZF1 RAD21 SMC3 USF1
5434224
chr19 10138698 rs56007907 T A
CTCF E2F1 MAX MAZ MXI1 MYC RAD21 SMC3 SPDEF USF1
5434225
chr19 10138699 rs112854464 CT C
CTCF E2F1 MAX MAZ MXI1 MYC RAD21 SMC3 SPDEF USF1
5434226
chr19 10138699 rs767520909 CT C
CTCF E2F1 MAX MAZ MXI1 MYC RAD21 SMC3 SPDEF USF1
5434227
chr19 10138701 rs57883994 T C
CTCF E2F1 GATA2 MAX MAZ MXI1 MYC RAD21 SMC3 SPDEF USF1
5434228
chr19 10138722 rs568361161 C T
CTCF MAX MAZ MXI1 MYC USF1
5434229
Genes possibly regulated by vista28560[chr19:10138488-10138727]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 9964394 10047228 - OLFM2 ENSG00000105088.4 10047228 0.67 1.0 16988 8740
chr19 10070237 10121147 - COL5A3 ENSG00000080573.6 10121147 0.83 0.99 16989 82659
chr19 10123925 10132955 + RDH8 ENSG00000080511.2 10123925 0.94 1.0 16990 85437
chr19 10196798 10203928 + C19orf66 ENSG00000130813.13 10196798 0.84 1.0 16991 41929
chr19 10203014 10213472 - ANGPTL6 ENSG00000130812.6 10213472 0.95 1.0 16992 25255
chr19 10216899 10225456 + PPAN-P2RY11 ENSG00000243207.2 10216899 0.87 0.85 16993 21828
chr19 10216965 10225414 + PPAN ENSG00000130810.15 10216965 0.83 0.91 16994 21762
chr19 10222214 10226048 + P2RY11 ENSG00000244165.1 10222214 0.68 1.0 16995 16513
chr19 10225693 10230596 - EIF3G ENSG00000130811.6 10230596 0.61 1.0 16996 8131
Expression level of Genes
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miRNAs possibly regulated by vista28560[chr19:10138488-10138727]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr19 10149067 10149089 + hsa-miR-5589-3p MIMAT0022298 10148274 0.1627040838421896 0.0 0.0 813
Expression level of miRNAs
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