EnhancerDB
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  3. vista28561[chr19:10148101-10148280]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28561[chr19:10148101-10148280]
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Tissue distribution of vista28561
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Transcription factor that possibly regulate vista28561[chr19:10148101-10148280]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 10148095 10148109 PLAG1 JASPAR yes 70801067
chr19 10148095 10148109 PLAG1 JASPAR yes 112406494
chr19 10148102 10148116 GLIS2 JASPAR yes 70801068
chr19 10148102 10148116 GLIS2 JASPAR yes 112406495
chr19 10148103 10148114 EBF1 JASPAR yes 70801069
chr19 10148103 10148114 EBF1 JASPAR yes 112406496
chr19 10148109 10148114 ETS2 TRANSFAC yes 70801070
chr19 10148109 10148114 ETS2 TRANSFAC yes 112406497
chr19 10148122 10148126 LFA1 TRANSFAC yes 70801071
chr19 10148122 10148126 LFA1 TRANSFAC yes 112406498
chr19 10148156 10148161 ETS2 TRANSFAC yes 70801072
chr19 10148156 10148161 ETS2 TRANSFAC yes 112406499
chr19 10148168 10148184 GLIS1 JASPAR yes 70801073
chr19 10148168 10148184 GLIS1 JASPAR yes 112406500
chr19 10148180 10148185 SP1 TRANSFAC yes 70801074
chr19 10148180 10148185 SP1 TRANSFAC yes 112406501
chr19 10148180 10148186 SP1 TRANSFAC yes 70801075
chr19 10148180 10148186 SP1 TRANSFAC yes 112406502
chr19 10148191 10148201 HOXB13 JASPAR yes 70801076
chr19 10148191 10148201 HOXB13 JASPAR yes 112406503
chr19 10148195 10148215 PPARG JASPAR yes 70801077
chr19 10148195 10148215 PPARG JASPAR yes 112406504
chr19 10148196 10148216 PPARG JASPAR yes 70801078
chr19 10148196 10148216 PPARG JASPAR yes 112406505
chr19 10148211 10148219 TBX5 JASPAR yes 70801079
chr19 10148211 10148219 TBX5 JASPAR yes 112406506
chr19 10148211 10148220 ZEB1 JASPAR yes 70801080
chr19 10148211 10148220 ZEB1 JASPAR yes 112406507
chr19 10148211 10148226 SCRT1 JASPAR yes 70801081
chr19 10148211 10148226 SCRT1 JASPAR yes 112406508
chr19 10148212 10148222 FIGLA JASPAR yes 70801082
chr19 10148212 10148222 ID4 JASPAR yes 70801083
chr19 10148212 10148222 MSC JASPAR yes 70801084
chr19 10148212 10148222 MYF6 JASPAR yes 70801085
chr19 10148212 10148222 TCF3 JASPAR yes 70801086
chr19 10148212 10148222 TCF4 JASPAR yes 70801087
chr19 10148212 10148222 FIGLA JASPAR yes 112406509
chr19 10148212 10148222 ID4 JASPAR yes 112406510
chr19 10148212 10148222 MSC JASPAR yes 112406511
chr19 10148212 10148222 MYF6 JASPAR yes 112406512
chr19 10148212 10148222 TCF3 JASPAR yes 112406513
chr19 10148212 10148222 TCF4 JASPAR yes 112406514
chr19 10148213 10148222 SNAI2 JASPAR yes 70801088
chr19 10148213 10148222 SNAI2 JASPAR yes 112406515
chr19 10148214 10148219 USF2 TRANSFAC yes 70801089
chr19 10148214 10148219 USF2 TRANSFAC yes 112406516
chr19 10148215 10148221 PTF TRANSFAC yes 70801090
chr19 10148215 10148221 PTF TRANSFAC yes 112406517
chr19 10148218 10148226 FOXO3 JASPAR yes 70801091
chr19 10148218 10148226 FOXO3 JASPAR yes 112406518
chr19 10148229 10148232 MYB TRANSFAC yes 70801092
chr19 10148229 10148232 MYB TRANSFAC yes 112406519
chr19 10148241 10148259 TP53 JASPAR yes 70801093
chr19 10148241 10148259 TP53 JASPAR yes 112406520
chr19 10148242 10148257 TP53 JASPAR yes 70801094
chr19 10148242 10148257 TP53 JASPAR yes 112406521
chr19 10148243 10148258 TP53 JASPAR yes 70801095
chr19 10148243 10148258 TP53 JASPAR yes 112406522
chr19 10148248 10148259 FOXA1 JASPAR yes 70801096
chr19 10148248 10148259 FOXA1 JASPAR yes 112406523
chr19 10148248 10148263 FOXA1 JASPAR yes 70801097
chr19 10148248 10148263 FOXA1 JASPAR yes 112406524
chr19 10148270 10148274 LFA1 TRANSFAC yes 70801098
chr19 10148270 10148274 LFA1 TRANSFAC yes 112406525
SNP sites on vista28561[chr19:10148101-10148280]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 10148118 rs10408877 G A no 5434314
chr19 10148128 rs528709503 C T no 5434315
chr19 10148150 rs369998779 C T no 5434316
chr19 10148279 rs188814495 A G no 5434317
Genes possibly regulated by vista28561[chr19:10148101-10148280]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 10070237 10121147 - COL5A3 ENSG00000080573.6 10121147 0.83 0.99 16989 73046
chr19 10123925 10132955 + RDH8 ENSG00000080511.2 10123925 0.94 1.0 16990 75824
chr19 10196798 10203928 + C19orf66 ENSG00000130813.13 10196798 0.84 1.0 16991 51482
chr19 10203014 10213472 - ANGPTL6 ENSG00000130812.6 10213472 0.95 1.0 16992 34808
chr19 10216899 10225456 + PPAN-P2RY11 ENSG00000243207.2 10216899 0.87 0.85 16993 31381
chr19 10216965 10225414 + PPAN ENSG00000130810.15 10216965 0.83 0.91 16994 31315
chr19 10222214 10226048 + P2RY11 ENSG00000244165.1 10222214 0.68 1.0 16995 26066
chr19 10225693 10230596 - EIF3G ENSG00000130811.6 10230596 0.61 1.0 16996 17684
Expression level of Genes
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miRNAs possibly regulated by vista28561[chr19:10148101-10148280]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results