EnhancerDB
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  3. vista28624[chr19:11404382-11404791]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28624[chr19:11404382-11404791]
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Tissue distribution of vista28624
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Transcription factor that possibly regulate vista28624[chr19:11404382-11404791]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 11404400 11405005 CTCF UCSC Txn Factor no Conserved 108385055
chr19 11404476 11404759 SMC3 UCSC Txn Factor no Conserved 108385085
chr19 11404481 11404757 RAD21 UCSC Txn Factor no Conserved 108385088
chr19 11404382 11404397 FOXP1 JASPAR yes 70804270
chr19 11404383 11404398 FOXP1 JASPAR yes 70804271
chr19 11404384 11404399 FOXP1 JASPAR yes 70804272
chr19 11404384 11404405 IRF1 JASPAR yes 70804273
chr19 11404385 11404400 FOXP1 JASPAR yes 70804274
chr19 11404385 11404406 IRF1 JASPAR yes 70804275
chr19 11404386 11404401 FOXP1 JASPAR yes 70804276
chr19 11404386 11404407 IRF1 JASPAR yes 70804277
chr19 11404387 11404402 FOXP1 JASPAR yes 70804278
chr19 11404387 11404408 IRF1 JASPAR yes 70804279
chr19 11404388 11404403 FOXP1 JASPAR yes 70804280
chr19 11404388 11404409 IRF1 JASPAR yes 70804281
chr19 11404389 11404404 FOXP1 JASPAR yes 70804282
chr19 11404389 11404410 IRF1 JASPAR yes 70804283
chr19 11404390 11404405 FOXP1 JASPAR yes 70804284
chr19 11404390 11404411 IRF1 JASPAR yes 70804285
chr19 11404391 11404406 FOXP1 JASPAR yes 70804286
chr19 11404391 11404412 IRF1 JASPAR yes 70804287
chr19 11404392 11404407 FOXP1 JASPAR yes 70804288
chr19 11404392 11404413 IRF1 JASPAR yes 70804289
chr19 11404393 11404408 FOXP1 JASPAR yes 70804290
chr19 11404393 11404414 IRF1 JASPAR yes 70804291
chr19 11404394 11404409 FOXP1 JASPAR yes 70804292
chr19 11404394 11404415 IRF1 JASPAR yes 70804293
chr19 11404395 11404410 FOXP1 JASPAR yes 70804294
chr19 11404398 11404413 STAT2 JASPAR yes 70804295
chr19 11404398 11404419 IRF1 JASPAR yes 70804296
chr19 11404402 11404416 SPI1 JASPAR yes 70804297
chr19 11404413 11404418 GATA1 TRANSFAC yes 70804298
chr19 11404421 11404425 YY1 TRANSFAC yes 70804299
chr19 11404443 11404449 TCF4 TRANSFAC yes 70804300
chr19 11404445 11404461 ZNF143 JASPAR yes 70804301
chr19 11404478 11404482 LFA1 TRANSFAC yes 70804302
chr19 11404484 11404489 ETS2 TRANSFAC yes 70804303
chr19 11404493 11404507 PAX6 JASPAR yes 70804304
chr19 11404496 11404510 STAT1 JASPAR yes 70804305
chr19 11404501 11404512 FLI1 JASPAR yes 70804306
chr19 11404502 11404506 YY1 TRANSFAC yes 70804307
chr19 11404503 11404511 FEV JASPAR yes 70804308
chr19 11404522 11404532 SP1 JASPAR yes 70804309
chr19 11404523 11404533 SP1 JASPAR yes 70804310
chr19 11404524 11404529 SP1 TRANSFAC yes 70804311
chr19 11404525 11404530 SP1 TRANSFAC yes 70804312
chr19 11404525 11404531 SP1 TRANSFAC yes 70804313
chr19 11404530 11404534 H4TF2 TRANSFAC yes 70804314
chr19 11404531 11404546 TFAP2C JASPAR yes 70804315
chr19 11404532 11404543 EBF1 JASPAR yes 70804316
chr19 11404532 11404543 TFAP2A JASPAR yes 70804317
chr19 11404532 11404543 TFAP2B JASPAR yes 70804318
chr19 11404532 11404543 TFAP2C JASPAR yes 70804319
chr19 11404533 11404542 TFAP2A JASPAR yes 70804320
chr19 11404538 11404542 LFA1 TRANSFAC yes 70804321
chr19 11404546 11404550 LFA1 TRANSFAC yes 70804322
chr19 11404551 11404555 YY1 TRANSFAC yes 70804323
chr19 11404564 11404570 NFIC JASPAR yes 70804324
chr19 11404583 11404591 SP1 TRANSFAC yes 70804325
chr19 11404618 11404637 CTCF JASPAR yes 70804326
chr19 11404630 11404641 E2F1 JASPAR yes 70804327
chr19 11404662 11404683 ZNF263 JASPAR yes 70804328
chr19 11404668 11404674 MAZ TRANSFAC yes 70804329
chr19 11404686 11404691 SP1 TRANSFAC yes 70804330
chr19 11404695 11404705 SP1 JASPAR yes 70804331
chr19 11404696 11404704 SP1 TRANSFAC yes 70804332
chr19 11404696 11404705 SP1 TRANSFAC yes 70804333
chr19 11404697 11404702 SP1 TRANSFAC yes 70804334
chr19 11404698 11404703 SP1 TRANSFAC yes 70804335
chr19 11404698 11404704 SP1 TRANSFAC yes 70804336
chr19 11404721 11404735 STAT1 JASPAR yes 70804337
chr19 11404725 11404730 ETS2 TRANSFAC yes 70804338
chr19 11404729 11404735 ETS1 JASPAR yes 70804339
chr19 11404729 11404739 ELK1 JASPAR yes 70804340
chr19 11404729 11404744 HSF1 JASPAR yes 70804341
chr19 11404740 11404745 ETS2 TRANSFAC yes 70804342
chr19 11404740 11404757 BCL6B JASPAR yes 70804343
chr19 11404756 11404770 CREB3L1 JASPAR yes 70804344
chr19 11404770 11404784 MTF1 JASPAR yes 70804345
chr19 11404781 11404789 FOXC1 JASPAR yes 70804346
SNP sites on vista28624[chr19:11404382-11404791]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 11404473 rs367996 A G
CTCF
5442555
chr19 11404497 rs191714993 T C
CTCF PAX6 RAD21 SMC3 STAT1
5442556
chr19 11404504 rs73922632 A G
CTCF FEV FLI1 PAX6 RAD21 SMC3 STAT1 YY1
5442557
chr19 11404515 rs114842441 C T
CTCF RAD21 SMC3
5442558
chr19 11404568 rs184634325 G T
CTCF NFIC RAD21 SMC3
5442559
chr19 11404650 rs553157689 G A
CTCF RAD21 SMC3
5442560
chr19 11404677 rs450069 A C
CTCF RAD21 SMC3 ZNF263
5442561
chr19 11404710 rs370142501 G A
CTCF RAD21 SMC3
5442562
chr19 11404715 rs551953896 G GC
CTCF RAD21 SMC3
5442563
chr19 11404718 rs562611673 G A,C
CTCF RAD21 SMC3
5442564
chr19 11404734 rs79675274 C T
CTCF ELK1 ETS1 HSF1 RAD21 SMC3 STAT1
5442565
Genes possibly regulated by vista28624[chr19:11404382-11404791]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 11274943 11308467 - KANK2 ENSG00000197256.6 11308467 0.85 0.99 17031 4085
chr19 11309971 11373157 - DOCK6 ENSG00000130158.9 11373157 0.81 1.0 17032 68775
chr19 11348178 11352619 + C19orf80 ENSG00000130173.9 11348178 1.0 1.0 17033 43796
chr19 11406824 11437672 + TSPAN16 ENSG00000130167.9 11406824 0.92 1.0 17034 97967
chr19 11432722 11456946 - RAB3D ENSG00000105514.3 11456946 0.83 1.0 17035 47845
chr19 11453452 11457194 - TMEM205 ENSG00000105518.9 11457194 0.8 0.99 17036 47597
chr19 11455360 11465620 + CCDC159 ENSG00000183401.7 11455360 0.58 1.0 17037 49431
chr19 11466062 11476374 + DKFZP761J1410 ENSG00000105520.6 11466062 0.71 1.0 17038 38729
chr19 11485361 11487627 + SWSAP1 ENSG00000173928.2 11485361 0.75 0.99 17039 19430
chr19 11488236 11495018 - EPOR ENSG00000187266.9 11495018 0.94 1.0 17040 9773
Expression level of Genes
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miRNAs possibly regulated by vista28624[chr19:11404382-11404791]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results