EnhancerDB
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  3. vista28646[chr19:12427205-12427564]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28646[chr19:12427205-12427564]
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Tissue distribution of vista28646
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Transcription factor that possibly regulate vista28646[chr19:12427205-12427564]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 12427204 12427219 FOXP1 JASPAR yes 70805344
chr19 12427204 12427219 FOXP1 JASPAR yes 112483657
chr19 12427205 12427220 FOXP1 JASPAR yes 70805345
chr19 12427205 12427220 FOXP1 JASPAR yes 112483658
chr19 12427206 12427212 TBP TRANSFAC yes 70805346
chr19 12427206 12427212 TBP TRANSFAC yes 112483659
chr19 12427206 12427221 FOXP1 JASPAR yes 70805347
chr19 12427206 12427221 FOXP1 JASPAR yes 112483660
chr19 12427206 12427227 IRF1 JASPAR yes 70805348
chr19 12427206 12427227 IRF1 JASPAR yes 112483661
chr19 12427207 12427222 FOXP1 JASPAR yes 70805349
chr19 12427207 12427222 FOXP1 JASPAR yes 112483662
chr19 12427207 12427228 IRF1 JASPAR yes 70805350
chr19 12427207 12427228 IRF1 JASPAR yes 112483663
chr19 12427208 12427223 FOXP1 JASPAR yes 70805351
chr19 12427208 12427223 FOXP1 JASPAR yes 112483664
chr19 12427210 12427225 FOXP1 JASPAR yes 70805352
chr19 12427210 12427225 FOXP1 JASPAR yes 112483665
chr19 12427211 12427232 IRF1 JASPAR yes 70805353
chr19 12427211 12427232 IRF1 JASPAR yes 112483666
chr19 12427212 12427227 FOXP1 JASPAR yes 70805354
chr19 12427212 12427227 FOXP1 JASPAR yes 112483667
chr19 12427212 12427233 IRF1 JASPAR yes 70805355
chr19 12427212 12427233 IRF1 JASPAR yes 112483668
chr19 12427216 12427237 IRF1 JASPAR yes 70805356
chr19 12427216 12427237 IRF1 JASPAR yes 112483669
chr19 12427217 12427232 FOXP1 JASPAR yes 70805357
chr19 12427217 12427232 FOXP1 JASPAR yes 112483670
chr19 12427217 12427238 IRF1 JASPAR yes 70805358
chr19 12427217 12427238 IRF1 JASPAR yes 112483671
chr19 12427218 12427239 IRF1 JASPAR yes 70805359
chr19 12427218 12427239 IRF1 JASPAR yes 112483672
chr19 12427222 12427243 IRF1 JASPAR yes 70805360
chr19 12427222 12427243 IRF1 JASPAR yes 112483673
chr19 12427223 12427238 FOXP1 JASPAR yes 70805361
chr19 12427223 12427238 FOXP1 JASPAR yes 112483674
chr19 12427223 12427244 IRF1 JASPAR yes 70805362
chr19 12427223 12427244 IRF1 JASPAR yes 112483675
chr19 12427224 12427245 IRF1 JASPAR yes 70805363
chr19 12427224 12427245 IRF1 JASPAR yes 112483676
chr19 12427225 12427239 IRF7 JASPAR yes 70805364
chr19 12427225 12427239 IRF7 JASPAR yes 112483677
chr19 12427228 12427243 FOXP1 JASPAR yes 70805365
chr19 12427228 12427243 FOXP1 JASPAR yes 112483678
chr19 12427228 12427249 IRF1 JASPAR yes 70805366
chr19 12427228 12427249 IRF1 JASPAR yes 112483679
chr19 12427229 12427244 FOXP1 JASPAR yes 70805367
chr19 12427229 12427244 FOXP1 JASPAR yes 112483680
chr19 12427232 12427247 STAT2 JASPAR yes 70805368
chr19 12427232 12427247 STAT2 JASPAR yes 112483681
chr19 12427233 12427248 FOXP1 JASPAR yes 70805369
chr19 12427233 12427248 FOXP1 JASPAR yes 112483682
chr19 12427234 12427255 IRF1 JASPAR yes 70805370
chr19 12427234 12427255 IRF1 JASPAR yes 112483683
chr19 12427238 12427253 PRDM1 JASPAR yes 70805371
chr19 12427238 12427253 PRDM1 JASPAR yes 112483684
chr19 12427240 12427261 IRF1 JASPAR yes 70805372
chr19 12427240 12427261 IRF1 JASPAR yes 112483685
chr19 12427264 12427268 LFA1 TRANSFAC yes 70805373
chr19 12427264 12427268 LFA1 TRANSFAC yes 112483686
chr19 12427289 12427300 TBX2 JASPAR yes 70805374
chr19 12427289 12427300 TBX2 JASPAR yes 112483687
chr19 12427290 12427300 TBR1 JASPAR yes 70805375
chr19 12427290 12427300 TBR1 JASPAR yes 112483688
chr19 12427293 12427308 HNF1A JASPAR yes 70805376
chr19 12427293 12427308 HNF1A JASPAR yes 112483689
chr19 12427294 12427307 HNF1B JASPAR yes 70805377
chr19 12427294 12427307 HNF1B JASPAR yes 112483690
chr19 12427311 12427319 ISX JASPAR yes 70805378
chr19 12427311 12427319 LHX9 JASPAR yes 70805379
chr19 12427311 12427319 LMX1B JASPAR yes 70805380
chr19 12427311 12427319 PRRX1 JASPAR yes 70805381
chr19 12427311 12427319 RAX2 JASPAR yes 70805382
chr19 12427311 12427319 SHOX JASPAR yes 70805383
chr19 12427311 12427319 UNCX JASPAR yes 70805384
chr19 12427311 12427319 ISX JASPAR yes 112483691
chr19 12427311 12427319 LHX9 JASPAR yes 112483692
chr19 12427311 12427319 LMX1B JASPAR yes 112483693
chr19 12427311 12427319 PRRX1 JASPAR yes 112483694
chr19 12427311 12427319 RAX2 JASPAR yes 112483695
chr19 12427311 12427319 SHOX JASPAR yes 112483696
chr19 12427311 12427319 UNCX JASPAR yes 112483697
chr19 12427317 12427326 NF-GMa TRANSFAC yes 70805385
chr19 12427317 12427326 NF-GMa TRANSFAC yes 112483698
chr19 12427333 12427339 SOX10 JASPAR yes 70805386
chr19 12427333 12427339 SOX10 JASPAR yes 112483699
chr19 12427346 12427356 SREBF1 JASPAR yes 70805387
chr19 12427346 12427356 SREBF2 JASPAR yes 70805388
chr19 12427346 12427356 SREBF1 JASPAR yes 112483700
chr19 12427346 12427356 SREBF2 JASPAR yes 112483701
chr19 12427373 12427388 HNF4G JASPAR yes 70805389
chr19 12427373 12427388 HNF4G JASPAR yes 112483702
chr19 12427374 12427388 NR2F1 JASPAR yes 70805390
chr19 12427374 12427388 NR2F1 JASPAR yes 112483703
chr19 12427377 12427383 TCF4 TRANSFAC yes 70805391
chr19 12427377 12427383 TCF4 TRANSFAC yes 112483704
chr19 12427382 12427397 MEF2C JASPAR yes 70805392
chr19 12427382 12427397 MEF2C JASPAR yes 112483705
chr19 12427384 12427399 FOXP1 JASPAR yes 70805393
chr19 12427384 12427399 FOXP1 JASPAR yes 112483706
chr19 12427385 12427400 FOXP1 JASPAR yes 70805394
chr19 12427385 12427400 FOXP1 JASPAR yes 112483707
chr19 12427385 12427406 IRF1 JASPAR yes 70805395
chr19 12427385 12427406 IRF1 JASPAR yes 112483708
chr19 12427386 12427392 TBP TRANSFAC yes 70805396
chr19 12427386 12427392 TBP TRANSFAC yes 112483709
chr19 12427386 12427401 FOXP1 JASPAR yes 70805397
chr19 12427386 12427401 FOXP1 JASPAR yes 112483710
chr19 12427389 12427404 STAT2 JASPAR yes 70805398
chr19 12427389 12427404 STAT2 JASPAR yes 112483711
chr19 12427418 12427428 ALX3 JASPAR yes 70805399
chr19 12427418 12427428 ESX1 JASPAR yes 70805400
chr19 12427418 12427428 GSX1 JASPAR yes 70805401
chr19 12427418 12427428 GSX2 JASPAR yes 70805402
chr19 12427418 12427428 HOXB2 JASPAR yes 70805403
chr19 12427418 12427428 HOXB3 JASPAR yes 70805404
chr19 12427418 12427428 LBX2 JASPAR yes 70805405
chr19 12427418 12427428 LHX2 JASPAR yes 70805406
chr19 12427418 12427428 MEOX1 JASPAR yes 70805407
chr19 12427418 12427428 MEOX2 JASPAR yes 70805408
chr19 12427418 12427428 MIXL1 JASPAR yes 70805409
chr19 12427418 12427428 MNX1 JASPAR yes 70805410
chr19 12427418 12427428 NOTO JASPAR yes 70805411
chr19 12427418 12427428 ALX3 JASPAR yes 112483712
chr19 12427418 12427428 ESX1 JASPAR yes 112483713
chr19 12427418 12427428 GSX1 JASPAR yes 112483714
chr19 12427418 12427428 GSX2 JASPAR yes 112483715
chr19 12427418 12427428 HOXB2 JASPAR yes 112483716
chr19 12427418 12427428 HOXB3 JASPAR yes 112483717
chr19 12427418 12427428 LBX2 JASPAR yes 112483718
chr19 12427418 12427428 LHX2 JASPAR yes 112483719
chr19 12427418 12427428 MEOX1 JASPAR yes 112483720
chr19 12427418 12427428 MEOX2 JASPAR yes 112483721
chr19 12427418 12427428 MIXL1 JASPAR yes 112483722
chr19 12427418 12427428 MNX1 JASPAR yes 112483723
chr19 12427418 12427428 NOTO JASPAR yes 112483724
chr19 12427419 12427427 BSX JASPAR yes 70805412
chr19 12427419 12427427 DLX6 JASPAR yes 70805413
chr19 12427419 12427427 EN1 JASPAR yes 70805414
chr19 12427419 12427427 ISX JASPAR yes 70805415
chr19 12427419 12427427 LBX1 JASPAR yes 70805416
chr19 12427419 12427427 LHX9 JASPAR yes 70805417
chr19 12427419 12427427 LMX1A JASPAR yes 70805418
chr19 12427419 12427427 LMX1B JASPAR yes 70805419
chr19 12427419 12427427 NKX6-1 JASPAR yes 70805420
chr19 12427419 12427427 NKX6-2 JASPAR yes 70805421
chr19 12427419 12427427 PAX4 JASPAR yes 70805422
chr19 12427419 12427427 PDX1 JASPAR yes 70805423
chr19 12427419 12427427 PRRX1 JASPAR yes 70805424
chr19 12427419 12427427 RAX2 JASPAR yes 70805425
chr19 12427419 12427427 SHOX JASPAR yes 70805426
chr19 12427419 12427427 UNCX JASPAR yes 70805427
chr19 12427419 12427427 VAX1 JASPAR yes 70805428
chr19 12427419 12427427 VAX2 JASPAR yes 70805429
chr19 12427419 12427427 VSX1 JASPAR yes 70805430
chr19 12427419 12427427 VSX2 JASPAR yes 70805431
chr19 12427419 12427427 BSX JASPAR yes 112483725
chr19 12427419 12427427 DLX6 JASPAR yes 112483726
chr19 12427419 12427427 EN1 JASPAR yes 112483727
chr19 12427419 12427427 ISX JASPAR yes 112483728
chr19 12427419 12427427 LBX1 JASPAR yes 112483729
chr19 12427419 12427427 LHX9 JASPAR yes 112483730
chr19 12427419 12427427 LMX1A JASPAR yes 112483731
chr19 12427419 12427427 LMX1B JASPAR yes 112483732
chr19 12427419 12427427 NKX6-1 JASPAR yes 112483733
chr19 12427419 12427427 NKX6-2 JASPAR yes 112483734
chr19 12427419 12427427 PAX4 JASPAR yes 112483735
chr19 12427419 12427427 PDX1 JASPAR yes 112483736
chr19 12427419 12427427 PRRX1 JASPAR yes 112483737
chr19 12427419 12427427 RAX2 JASPAR yes 112483738
chr19 12427419 12427427 SHOX JASPAR yes 112483739
chr19 12427419 12427427 UNCX JASPAR yes 112483740
chr19 12427419 12427427 VAX1 JASPAR yes 112483741
chr19 12427419 12427427 VAX2 JASPAR yes 112483742
chr19 12427419 12427427 VSX1 JASPAR yes 112483743
chr19 12427419 12427427 VSX2 JASPAR yes 112483744
chr19 12427419 12427429 HOXD13 JASPAR yes 70805432
chr19 12427419 12427429 HOXD13 JASPAR yes 112483745
chr19 12427420 12427431 FOXB1 JASPAR yes 70805433
chr19 12427420 12427431 PHOX2A JASPAR yes 70805434
chr19 12427420 12427431 PROP1 JASPAR yes 70805435
chr19 12427420 12427431 FOXB1 JASPAR yes 112483746
chr19 12427420 12427431 PHOX2A JASPAR yes 112483747
chr19 12427420 12427431 PROP1 JASPAR yes 112483748
chr19 12427429 12427444 FOXA1 JASPAR yes 70805436
chr19 12427429 12427444 FOXA1 JASPAR yes 112483749
chr19 12427480 12427485 MYB TRANSFAC yes 70805437
chr19 12427480 12427485 MYB TRANSFAC yes 112483750
chr19 12427496 12427500 YY1 TRANSFAC yes 70805438
chr19 12427496 12427500 YY1 TRANSFAC yes 112483751
chr19 12427505 12427509 YY1 TRANSFAC yes 70805439
chr19 12427505 12427509 YY1 TRANSFAC yes 112483752
chr19 12427529 12427534 GATA1 TRANSFAC yes 70805440
chr19 12427529 12427534 GATA1 TRANSFAC yes 112483753
chr19 12427555 12427559 H1TF2 TRANSFAC yes 70805441
chr19 12427555 12427559 NFE TRANSFAC yes 70805442
chr19 12427555 12427559 SRF TRANSFAC yes 70805443
chr19 12427555 12427559 H1TF2 TRANSFAC yes 112483754
chr19 12427555 12427559 NFE TRANSFAC yes 112483755
chr19 12427555 12427559 SRF TRANSFAC yes 112483756
SNP sites on vista28646[chr19:12427205-12427564]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 12427227 rs148775087 A G
FOXP1 IRF1 IRF7
5445487
chr19 12427288 rs10422077 C T no 5445488
chr19 12427301 rs142549789 G T
HNF1A HNF1B
5445489
chr19 12427303 rs150965702 T G
HNF1A HNF1B
5445490
chr19 12427491 rs146754761 T C no 5445491
Genes possibly regulated by vista28646[chr19:12427205-12427564]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 12335501 12405702 - ZNF44 ENSG00000197857.9 12405702 0.87 0.98 17071 78497
chr19 12428291 12444534 - ZNF563 ENSG00000188868.9 12444534 0.68 0.97 17072 83030
chr19 12460185 12476719 - ZNF442 ENSG00000198342.5 12476719 0.74 0.9 17073 50845
chr19 12490003 12512088 - CTD-3105H18.14 ENSG00000268744.1 12512088 0.85 0.92 17074 15476
chr19 12500830 12512085 - ZNF799 ENSG00000196466.6 12512085 0.65 0.94 17075 15479
Expression level of Genes
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miRNAs possibly regulated by vista28646[chr19:12427205-12427564]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results