EnhancerDB
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  3. vista28649[chr19:12888910-12889352]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28649[chr19:12888910-12889352]
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Tissue distribution of vista28649
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Transcription factor that possibly regulate vista28649[chr19:12888910-12889352]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 12888376 12888965 CTCF UCSC Txn Factor no Conserved 108385881
chr19 12888858 12889679 POLR2A UCSC Txn Factor no Conserved 108385884
chr19 12888858 12889679 POLR2A UCSC Txn Factor no Conserved 108385885
chr19 12888906 12888916 SP1 JASPAR yes 70805544
chr19 12888906 12888916 SP1 JASPAR yes 112492764
chr19 12888907 12888912 SP1 TRANSFAC yes 70805545
chr19 12888907 12888912 SP1 TRANSFAC yes 112492765
chr19 12888908 12888913 SP1 TRANSFAC yes 70805546
chr19 12888908 12888913 SP1 TRANSFAC yes 112492766
chr19 12888908 12888914 SP1 TRANSFAC yes 70805547
chr19 12888908 12888914 SP1 TRANSFAC yes 112492767
chr19 12888922 12888930 HOXA5 JASPAR yes 70805548
chr19 12888922 12888930 HOXA5 JASPAR yes 112492768
chr19 12888923 12888933 ALX3 JASPAR yes 70805549
chr19 12888923 12888933 EMX1 JASPAR yes 70805550
chr19 12888923 12888933 EMX2 JASPAR yes 70805551
chr19 12888923 12888933 ESX1 JASPAR yes 70805552
chr19 12888923 12888933 EVX1 JASPAR yes 70805553
chr19 12888923 12888933 EVX2 JASPAR yes 70805554
chr19 12888923 12888933 GBX1 JASPAR yes 70805555
chr19 12888923 12888933 GBX2 JASPAR yes 70805556
chr19 12888923 12888933 GSX1 JASPAR yes 70805557
chr19 12888923 12888933 GSX2 JASPAR yes 70805558
chr19 12888923 12888933 HESX1 JASPAR yes 70805559
chr19 12888923 12888933 HOXA2 JASPAR yes 70805560
chr19 12888923 12888933 HOXB2 JASPAR yes 70805561
chr19 12888923 12888933 HOXB3 JASPAR yes 70805562
chr19 12888923 12888933 LBX2 JASPAR yes 70805563
chr19 12888923 12888933 LHX2 JASPAR yes 70805564
chr19 12888923 12888933 LHX6 JASPAR yes 70805565
chr19 12888923 12888933 MEOX1 JASPAR yes 70805566
chr19 12888923 12888933 MEOX2 JASPAR yes 70805567
chr19 12888923 12888933 MIXL1 JASPAR yes 70805568
chr19 12888923 12888933 MNX1 JASPAR yes 70805569
chr19 12888923 12888933 NOTO JASPAR yes 70805570
chr19 12888923 12888933 POU6F1 JASPAR yes 70805571
chr19 12888923 12888933 RAX JASPAR yes 70805572
chr19 12888923 12888933 ALX3 JASPAR yes 112492769
chr19 12888923 12888933 EMX1 JASPAR yes 112492770
chr19 12888923 12888933 EMX2 JASPAR yes 112492771
chr19 12888923 12888933 ESX1 JASPAR yes 112492772
chr19 12888923 12888933 EVX1 JASPAR yes 112492773
chr19 12888923 12888933 EVX2 JASPAR yes 112492774
chr19 12888923 12888933 GBX1 JASPAR yes 112492775
chr19 12888923 12888933 GBX2 JASPAR yes 112492776
chr19 12888923 12888933 GSX1 JASPAR yes 112492777
chr19 12888923 12888933 GSX2 JASPAR yes 112492778
chr19 12888923 12888933 HESX1 JASPAR yes 112492779
chr19 12888923 12888933 HOXA2 JASPAR yes 112492780
chr19 12888923 12888933 HOXB2 JASPAR yes 112492781
chr19 12888923 12888933 HOXB3 JASPAR yes 112492782
chr19 12888923 12888933 LBX2 JASPAR yes 112492783
chr19 12888923 12888933 LHX2 JASPAR yes 112492784
chr19 12888923 12888933 LHX6 JASPAR yes 112492785
chr19 12888923 12888933 MEOX1 JASPAR yes 112492786
chr19 12888923 12888933 MEOX2 JASPAR yes 112492787
chr19 12888923 12888933 MIXL1 JASPAR yes 112492788
chr19 12888923 12888933 MNX1 JASPAR yes 112492789
chr19 12888923 12888933 NOTO JASPAR yes 112492790
chr19 12888923 12888933 POU6F1 JASPAR yes 112492791
chr19 12888923 12888933 RAX JASPAR yes 112492792
chr19 12888924 12888932 EN1 JASPAR yes 70805573
chr19 12888924 12888932 ISX JASPAR yes 70805574
chr19 12888924 12888932 LBX1 JASPAR yes 70805575
chr19 12888924 12888932 LHX9 JASPAR yes 70805576
chr19 12888924 12888932 PAX4 JASPAR yes 70805577
chr19 12888924 12888932 PDX1 JASPAR yes 70805578
chr19 12888924 12888932 PRRX1 JASPAR yes 70805579
chr19 12888924 12888932 RAX2 JASPAR yes 70805580
chr19 12888924 12888932 SHOX JASPAR yes 70805581
chr19 12888924 12888932 UNCX JASPAR yes 70805582
chr19 12888924 12888932 VAX1 JASPAR yes 70805583
chr19 12888924 12888932 VAX2 JASPAR yes 70805584
chr19 12888924 12888932 VSX1 JASPAR yes 70805585
chr19 12888924 12888932 VSX2 JASPAR yes 70805586
chr19 12888924 12888932 EN1 JASPAR yes 112492793
chr19 12888924 12888932 ISX JASPAR yes 112492794
chr19 12888924 12888932 LBX1 JASPAR yes 112492795
chr19 12888924 12888932 LHX9 JASPAR yes 112492796
chr19 12888924 12888932 PAX4 JASPAR yes 112492797
chr19 12888924 12888932 PDX1 JASPAR yes 112492798
chr19 12888924 12888932 PRRX1 JASPAR yes 112492799
chr19 12888924 12888932 RAX2 JASPAR yes 112492800
chr19 12888924 12888932 SHOX JASPAR yes 112492801
chr19 12888924 12888932 UNCX JASPAR yes 112492802
chr19 12888924 12888932 VAX1 JASPAR yes 112492803
chr19 12888924 12888932 VAX2 JASPAR yes 112492804
chr19 12888924 12888932 VSX1 JASPAR yes 112492805
chr19 12888924 12888932 VSX2 JASPAR yes 112492806
chr19 12888951 12888959 SP1 TRANSFAC yes 70805587
chr19 12888951 12888959 SP1 TRANSFAC yes 112492807
chr19 12888951 12888961 SP1 JASPAR yes 70805588
chr19 12888951 12888961 SP1 JASPAR yes 112492808
chr19 12888953 12888959 MAZ TRANSFAC yes 70805589
chr19 12888953 12888959 MAZ TRANSFAC yes 112492809
chr19 12888957 12888965 SP1 TRANSFAC yes 70805590
chr19 12888957 12888965 SP1 TRANSFAC yes 112492810
chr19 12888957 12888967 SP1 JASPAR yes 70805591
chr19 12888957 12888967 SP1 JASPAR yes 112492811
chr19 12888958 12888963 SP1 TRANSFAC yes 70805592
chr19 12888958 12888963 SP1 TRANSFAC yes 112492812
chr19 12888959 12888964 SP1 TRANSFAC yes 70805593
chr19 12888959 12888964 SP1 TRANSFAC yes 112492813
chr19 12888974 12888981 SP1 TRANSFAC yes 70805594
chr19 12888974 12888981 SP1 TRANSFAC yes 112492814
chr19 12888974 12888984 SP1 JASPAR yes 70805595
chr19 12888974 12888984 SP1 JASPAR yes 112492815
chr19 12888975 12888983 SP1 TRANSFAC yes 70805596
chr19 12888975 12888983 SP1 TRANSFAC yes 112492816
chr19 12888976 12888981 SP1 TRANSFAC yes 70805597
chr19 12888976 12888981 SP1 TRANSFAC yes 112492817
chr19 12888977 12888982 SP1 TRANSFAC yes 70805598
chr19 12888977 12888982 SP1 TRANSFAC yes 112492818
chr19 12888993 12889003 SP1 JASPAR yes 70805599
chr19 12888993 12889003 SP1 JASPAR yes 112492819
chr19 12888995 12889001 MAZ TRANSFAC yes 70805600
chr19 12888995 12889001 MAZ TRANSFAC yes 112492820
chr19 12889028 12889039 E2F1 JASPAR yes 70805601
chr19 12889028 12889039 E2F1 JASPAR yes 112492821
chr19 12889045 12889057 TFAP2A JASPAR yes 70805602
chr19 12889045 12889057 TFAP2B JASPAR yes 70805603
chr19 12889045 12889057 TFAP2C JASPAR yes 70805604
chr19 12889045 12889057 TFAP2A JASPAR yes 112492822
chr19 12889045 12889057 TFAP2B JASPAR yes 112492823
chr19 12889045 12889057 TFAP2C JASPAR yes 112492824
chr19 12889045 12889060 TFAP2A JASPAR yes 70805605
chr19 12889045 12889060 TFAP2C JASPAR yes 70805606
chr19 12889045 12889060 TFAP2A JASPAR yes 112492825
chr19 12889045 12889060 TFAP2C JASPAR yes 112492826
chr19 12889051 12889072 ZNF263 JASPAR yes 70805607
chr19 12889051 12889072 ZNF263 JASPAR yes 112492827
chr19 12889058 12889063 SP1 TRANSFAC yes 70805608
chr19 12889058 12889063 SP1 TRANSFAC yes 112492828
chr19 12889061 12889065 LFA1 TRANSFAC yes 70805609
chr19 12889061 12889065 LFA1 TRANSFAC yes 112492829
chr19 12889064 12889076 IRF1 JASPAR yes 70805610
chr19 12889064 12889076 IRF1 JASPAR yes 112492830
chr19 12889068 12889076 MEIS2 JASPAR yes 70805611
chr19 12889068 12889076 MEIS3 JASPAR yes 70805612
chr19 12889068 12889076 MEIS2 JASPAR yes 112492831
chr19 12889068 12889076 MEIS3 JASPAR yes 112492832
chr19 12889070 12889080 MSC JASPAR yes 70805613
chr19 12889070 12889080 MYF6 JASPAR yes 70805614
chr19 12889070 12889080 NHLH1 JASPAR yes 70805615
chr19 12889070 12889080 MSC JASPAR yes 112492833
chr19 12889070 12889080 MYF6 JASPAR yes 112492834
chr19 12889070 12889080 NHLH1 JASPAR yes 112492835
chr19 12889110 12889122 INSM1 JASPAR yes 70805616
chr19 12889110 12889122 INSM1 JASPAR yes 112492836
chr19 12889112 12889132 RREB1 JASPAR yes 70805617
chr19 12889112 12889132 RREB1 JASPAR yes 112492837
chr19 12889141 12889152 NRF1 JASPAR yes 70805618
chr19 12889141 12889152 NRF1 JASPAR yes 112492838
chr19 12889155 12889169 PLAG1 JASPAR yes 70805619
chr19 12889155 12889169 PLAG1 JASPAR yes 112492839
chr19 12889157 12889166 TFAP2A JASPAR yes 70805620
chr19 12889157 12889166 TFAP2A JASPAR yes 112492840
chr19 12889160 12889174 PLAG1 JASPAR yes 70805621
chr19 12889160 12889174 PLAG1 JASPAR yes 112492841
chr19 12889161 12889166 SP1 TRANSFAC yes 70805622
chr19 12889161 12889166 SP1 TRANSFAC yes 112492842
chr19 12889180 12889201 ZNF263 JASPAR yes 70805623
chr19 12889180 12889201 ZNF263 JASPAR yes 112492843
chr19 12889182 12889187 GATA2 JASPAR yes 70805624
chr19 12889182 12889187 GATA2 JASPAR yes 112492844
chr19 12889184 12889190 MZF1 JASPAR yes 70805625
chr19 12889184 12889190 MZF1 JASPAR yes 112492845
chr19 12889195 12889206 E2F4 JASPAR yes 70805626
chr19 12889195 12889206 E2F6 JASPAR yes 70805627
chr19 12889195 12889206 E2F4 JASPAR yes 112492846
chr19 12889195 12889206 E2F6 JASPAR yes 112492847
chr19 12889196 12889207 E2F1 JASPAR yes 70805628
chr19 12889196 12889207 E2F1 JASPAR yes 112492848
chr19 12889197 12889212 ZBTB33 JASPAR yes 70805629
chr19 12889197 12889212 ZBTB33 JASPAR yes 112492849
chr19 12889204 12889214 RELA JASPAR yes 70805630
chr19 12889204 12889214 RELA JASPAR yes 112492850
chr19 12889208 12889215 NFATC2 JASPAR yes 70805631
chr19 12889208 12889215 NFATC2 JASPAR yes 112492851
chr19 12889221 12889232 EBF1 JASPAR yes 70805632
chr19 12889221 12889232 EBF1 JASPAR yes 112492852
chr19 12889235 12889256 ZNF263 JASPAR yes 70805633
chr19 12889235 12889256 ZNF263 JASPAR yes 112492853
chr19 12889240 12889261 ZNF263 JASPAR yes 70805634
chr19 12889240 12889261 ZNF263 JASPAR yes 112492854
chr19 12889243 12889248 GATA2 JASPAR yes 70805635
chr19 12889243 12889248 GATA2 JASPAR yes 112492855
chr19 12889248 12889262 PLAG1 JASPAR yes 70805636
chr19 12889248 12889262 PLAG1 JASPAR yes 112492856
chr19 12889250 12889260 SP1 JASPAR yes 70805637
chr19 12889250 12889260 SP1 JASPAR yes 112492857
chr19 12889251 12889261 SP1 JASPAR yes 70805638
chr19 12889251 12889261 SP1 JASPAR yes 112492858
chr19 12889252 12889257 ETS2 TRANSFAC yes 70805639
chr19 12889252 12889257 ETS2 TRANSFAC yes 112492859
chr19 12889256 12889271 HNF4G JASPAR yes 70805640
chr19 12889256 12889271 HNF4G JASPAR yes 112492860
chr19 12889278 12889289 ELK4 JASPAR yes 70805641
chr19 12889278 12889289 ELK4 JASPAR yes 112492861
chr19 12889279 12889289 ELK1 JASPAR yes 70805642
chr19 12889279 12889289 ERG JASPAR yes 70805643
chr19 12889279 12889289 ETV5 JASPAR yes 70805644
chr19 12889279 12889289 FEV JASPAR yes 70805645
chr19 12889279 12889289 FLI1 JASPAR yes 70805646
chr19 12889279 12889289 ELK1 JASPAR yes 112492862
chr19 12889279 12889289 ERG JASPAR yes 112492863
chr19 12889279 12889289 ETV5 JASPAR yes 112492864
chr19 12889279 12889289 FEV JASPAR yes 112492865
chr19 12889279 12889289 FLI1 JASPAR yes 112492866
chr19 12889280 12889289 ELK4 JASPAR yes 70805647
chr19 12889280 12889289 ELK4 JASPAR yes 112492867
chr19 12889281 12889287 ETS1 JASPAR yes 70805648
chr19 12889281 12889287 SPI1 JASPAR yes 70805649
chr19 12889281 12889287 ETS1 JASPAR yes 112492868
chr19 12889281 12889287 SPI1 JASPAR yes 112492869
chr19 12889281 12889291 ELK1 JASPAR yes 70805650
chr19 12889281 12889291 ELK1 JASPAR yes 112492870
chr19 12889294 12889298 NFE TRANSFAC yes 70805651
chr19 12889294 12889298 NFE TRANSFAC yes 112492871
chr19 12889295 12889306 ELK4 JASPAR yes 70805652
chr19 12889295 12889306 ELK4 JASPAR yes 112492872
chr19 12889296 12889306 GABPA JASPAR yes 70805653
chr19 12889296 12889306 GABPA JASPAR yes 112492873
chr19 12889298 12889304 ETS1 JASPAR yes 70805654
chr19 12889298 12889304 SPI1 JASPAR yes 70805655
chr19 12889298 12889304 ETS1 JASPAR yes 112492874
chr19 12889298 12889304 SPI1 JASPAR yes 112492875
chr19 12889298 12889308 ELK1 JASPAR yes 70805656
chr19 12889298 12889308 ELK1 JASPAR yes 112492876
chr19 12889315 12889325 MSC JASPAR yes 70805657
chr19 12889315 12889325 MYF6 JASPAR yes 70805658
chr19 12889315 12889325 NHLH1 JASPAR yes 70805659
chr19 12889315 12889325 TFAP4 JASPAR yes 70805660
chr19 12889315 12889325 MSC JASPAR yes 112492877
chr19 12889315 12889325 MYF6 JASPAR yes 112492878
chr19 12889315 12889325 NHLH1 JASPAR yes 112492879
chr19 12889315 12889325 TFAP4 JASPAR yes 112492880
SNP sites on vista28649[chr19:12888910-12889352]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 12888915 rs117582232 G A
CTCF POLR2A SP1
5446735
chr19 12888986 rs370637515 C T
POLR2A
5446736
chr19 12889224 rs11667764 C A
EBF1 POLR2A
5446737
chr19 12889225 rs11667765 C T
EBF1 POLR2A
5446738
Genes possibly regulated by vista28649[chr19:12888910-12889352]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 12786531 12792716 - DHPS ENSG00000095059.11 12792716 0.54 1.0 17090 3806
chr19 12798867 12807457 - FBXW9 ENSG00000132004.8 12807457 0.7 1.0 17091 18547
chr19 12810008 12834825 - TNPO2 ENSG00000105576.11 12834825 0.68 1.0 17092 45915
chr19 12841454 12845589 - C19orf43 ENSG00000123144.6 12845589 0.53 0.99 17093 56679
chr19 12847953 12859137 + ASNA1 ENSG00000198356.7 12847953 0.61 0.99 17094 59043
chr19 12862516 12869272 + BEST2 ENSG00000039987.2 12862516 1.0 0.99 17095 73606
chr19 12873817 12983554 - HOOK2 ENSG00000095066.7 12983554 0.8 1.0 17096 5798
chr19 12902310 12904124 + JUNB ENSG00000171223.4 12902310 0.87 1.0 17097 87042
chr19 12907634 12912694 - PRDX2 ENSG00000167815.7 12912694 0.59 1.0 17098 76658
chr19 12917394 12924452 + RNASEH2A ENSG00000104889.4 12917394 0.86 0.99 17099 71958
chr19 12936292 12946242 - RTBDN ENSG00000132026.9 12946242 0.99 1.0 17100 43110
chr19 12944765 12985765 + MAST1 ENSG00000105613.5 12944765 0.78 1.0 17101 44587
Expression level of Genes
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miRNAs possibly regulated by vista28649[chr19:12888910-12889352]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results