EnhancerDB
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  3. vista28650[chr19:12889371-12889726]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28650[chr19:12889371-12889726]
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Tissue distribution of vista28650
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Transcription factor that possibly regulate vista28650[chr19:12889371-12889726]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 12888858 12889679 POLR2A UCSC Txn Factor no Conserved 108385884
chr19 12888858 12889679 POLR2A UCSC Txn Factor no Conserved 108385885
chr19 12889502 12890110 YY1 UCSC Txn Factor no Conserved 108385976
chr19 12889365 12889371 NFIC JASPAR yes 70805661
chr19 12889365 12889371 NFIC JASPAR yes 112492881
chr19 12889367 12889371 H1TF2 TRANSFAC yes 70805662
chr19 12889367 12889371 NFE TRANSFAC yes 70805663
chr19 12889367 12889371 SRF TRANSFAC yes 70805664
chr19 12889367 12889371 H1TF2 TRANSFAC yes 112492882
chr19 12889367 12889371 NFE TRANSFAC yes 112492883
chr19 12889367 12889371 SRF TRANSFAC yes 112492884
chr19 12889402 12889417 ZIC3 JASPAR yes 70805665
chr19 12889402 12889417 ZIC3 JASPAR yes 112492885
chr19 12889427 12889437 FIGLA JASPAR yes 70805666
chr19 12889427 12889437 MSC JASPAR yes 70805667
chr19 12889427 12889437 MYF6 JASPAR yes 70805668
chr19 12889427 12889437 NHLH1 JASPAR yes 70805669
chr19 12889427 12889437 TFAP4 JASPAR yes 70805670
chr19 12889427 12889437 FIGLA JASPAR yes 112492886
chr19 12889427 12889437 MSC JASPAR yes 112492887
chr19 12889427 12889437 MYF6 JASPAR yes 112492888
chr19 12889427 12889437 NHLH1 JASPAR yes 112492889
chr19 12889427 12889437 TFAP4 JASPAR yes 112492890
chr19 12889436 12889450 PAX6 JASPAR yes 70805671
chr19 12889436 12889450 PAX6 JASPAR yes 112492891
chr19 12889444 12889462 TP73 JASPAR yes 70805672
chr19 12889444 12889462 TP73 JASPAR yes 112492892
chr19 12889459 12889474 JUND JASPAR yes 70805673
chr19 12889459 12889474 JUND JASPAR yes 112492893
chr19 12889472 12889476 YY1 TRANSFAC yes 70805674
chr19 12889472 12889476 YY1 TRANSFAC yes 112492894
chr19 12889474 12889489 NR2C2 JASPAR yes 70805675
chr19 12889474 12889489 NR2C2 JASPAR yes 112492895
chr19 12889476 12889482 SP1 TRANSFAC yes 70805676
chr19 12889476 12889482 SP1 TRANSFAC yes 112492896
chr19 12889477 12889482 SP1 TRANSFAC yes 70805677
chr19 12889477 12889482 SP1 TRANSFAC yes 112492897
chr19 12889478 12889483 SP1 TRANSFAC yes 70805678
chr19 12889478 12889483 SP1 TRANSFAC yes 112492898
chr19 12889478 12889484 SP1 TRANSFAC yes 70805679
chr19 12889478 12889484 SP1 TRANSFAC yes 112492899
chr19 12889478 12889490 ZBTB7B JASPAR yes 70805680
chr19 12889478 12889490 ZBTB7C JASPAR yes 70805681
chr19 12889478 12889490 ZBTB7B JASPAR yes 112492900
chr19 12889478 12889490 ZBTB7C JASPAR yes 112492901
chr19 12889479 12889491 ZBTB7A JASPAR yes 70805682
chr19 12889479 12889491 ZBTB7A JASPAR yes 112492902
chr19 12889491 12889506 LEF1 JASPAR yes 70805683
chr19 12889491 12889506 LEF1 JASPAR yes 112492903
chr19 12889491 12889511 RREB1 JASPAR yes 70805684
chr19 12889491 12889511 RREB1 JASPAR yes 112492904
chr19 12889492 12889506 TCF7L2 JASPAR yes 70805685
chr19 12889492 12889506 TCF7L2 JASPAR yes 112492905
chr19 12889504 12889514 MZF1 JASPAR yes 70805686
chr19 12889504 12889514 MZF1 JASPAR yes 112492906
chr19 12889517 12889527 RELA JASPAR yes 70805687
chr19 12889517 12889527 RELA JASPAR yes 112492907
chr19 12889528 12889532 YY1 TRANSFAC yes 70805688
chr19 12889528 12889532 YY1 TRANSFAC yes 112492908
chr19 12889530 12889542 POU2F1 JASPAR yes 70805689
chr19 12889530 12889542 POU2F1 JASPAR yes 112492909
chr19 12889530 12889543 POU3F3 JASPAR yes 70805690
chr19 12889530 12889543 POU3F3 JASPAR yes 112492910
chr19 12889531 12889544 POU2F2 JASPAR yes 70805691
chr19 12889531 12889544 POU2F2 JASPAR yes 112492911
chr19 12889549 12889562 POU3F3 JASPAR yes 70805692
chr19 12889549 12889562 POU3F3 JASPAR yes 112492912
chr19 12889549 12889563 POU1F1 JASPAR yes 70805693
chr19 12889549 12889563 POU1F1 JASPAR yes 112492913
chr19 12889550 12889562 POU3F2 JASPAR yes 70805694
chr19 12889550 12889562 POU3F2 JASPAR yes 112492914
chr19 12889580 12889593 ZBTB18 JASPAR yes 70805695
chr19 12889580 12889593 ZBTB18 JASPAR yes 112492915
chr19 12889582 12889594 TAL1 JASPAR yes 70805696
chr19 12889582 12889594 TAL1 JASPAR yes 112492916
chr19 12889606 12889612 MZF1 JASPAR yes 70805697
chr19 12889606 12889612 MZF1 JASPAR yes 112492917
chr19 12889617 12889622 ETS2 TRANSFAC yes 70805698
chr19 12889617 12889622 ETS2 TRANSFAC yes 112492918
chr19 12889643 12889653 SP1 JASPAR yes 70805699
chr19 12889643 12889653 SP1 JASPAR yes 112492919
chr19 12889655 12889658 MYB TRANSFAC yes 70805700
chr19 12889655 12889658 MYB TRANSFAC yes 112492920
chr19 12889658 12889670 YY1 JASPAR yes 70805701
chr19 12889658 12889670 YY1 JASPAR yes 112492921
chr19 12889663 12889667 YY1 TRANSFAC yes 70805702
chr19 12889663 12889667 YY1 TRANSFAC yes 112492922
chr19 12889682 12889700 SRF JASPAR yes 70805703
chr19 12889682 12889700 SRF JASPAR yes 112492923
chr19 12889683 12889695 SRF JASPAR yes 70805704
chr19 12889683 12889695 SRF JASPAR yes 112492924
chr19 12889688 12889692 YY1 TRANSFAC yes 70805705
chr19 12889688 12889692 YY1 TRANSFAC yes 112492925
chr19 12889689 12889701 E2F8 JASPAR yes 70805706
chr19 12889689 12889701 E2F8 JASPAR yes 112492926
chr19 12889690 12889702 E2F8 JASPAR yes 70805707
chr19 12889690 12889702 E2F8 JASPAR yes 112492927
chr19 12889692 12889697 TFAP2A TRANSFAC yes 70805708
chr19 12889692 12889697 TFAP2A TRANSFAC yes 112492928
chr19 12889692 12889698 MZF1 JASPAR yes 70805709
chr19 12889692 12889698 MZF1 JASPAR yes 112492929
chr19 12889716 12889726 SP1 JASPAR yes 70805710
chr19 12889716 12889726 SP1 JASPAR yes 112492930
chr19 12889718 12889729 E2F4 JASPAR yes 70805711
chr19 12889718 12889729 E2F4 JASPAR yes 112492931
chr19 12889719 12889724 SP1 TRANSFAC yes 70805712
chr19 12889719 12889724 SP1 TRANSFAC yes 112492932
chr19 12889719 12889725 SP1 TRANSFAC yes 70805713
chr19 12889719 12889725 SP1 TRANSFAC yes 112492933
chr19 12889723 12889728 ETS2 TRANSFAC yes 70805714
chr19 12889723 12889728 ETS2 TRANSFAC yes 112492934
SNP sites on vista28650[chr19:12889371-12889726]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 12889517 rs144135385 T C
POLR2A RELA YY1
5446739
Genes possibly regulated by vista28650[chr19:12889371-12889726]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 12786531 12792716 - DHPS ENSG00000095059.11 12792716 0.54 1.0 17090 3345
chr19 12798867 12807457 - FBXW9 ENSG00000132004.8 12807457 0.7 1.0 17091 18086
chr19 12810008 12834825 - TNPO2 ENSG00000105576.11 12834825 0.68 1.0 17092 45454
chr19 12841454 12845589 - C19orf43 ENSG00000123144.6 12845589 0.53 0.99 17093 56218
chr19 12847953 12859137 + ASNA1 ENSG00000198356.7 12847953 0.61 0.99 17094 58582
chr19 12862516 12869272 + BEST2 ENSG00000039987.2 12862516 1.0 0.99 17095 73145
chr19 12873817 12983554 - HOOK2 ENSG00000095066.7 12983554 0.8 1.0 17096 6172
chr19 12902310 12904124 + JUNB ENSG00000171223.4 12902310 0.87 1.0 17097 87416
chr19 12907634 12912694 - PRDX2 ENSG00000167815.7 12912694 0.59 1.0 17098 77032
chr19 12917394 12924452 + RNASEH2A ENSG00000104889.4 12917394 0.86 0.99 17099 72332
chr19 12936292 12946242 - RTBDN ENSG00000132026.9 12946242 0.99 1.0 17100 43484
chr19 12944765 12985765 + MAST1 ENSG00000105613.5 12944765 0.78 1.0 17101 44961
Expression level of Genes
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miRNAs possibly regulated by vista28650[chr19:12889371-12889726]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results