EnhancerDB
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  3. vista28664[chr19:13006078-13006409]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28664[chr19:13006078-13006409]
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Tissue distribution of vista28664
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Transcription factor that possibly regulate vista28664[chr19:13006078-13006409]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13006081 13006096 MEF2C JASPAR yes 70806859
chr19 13006090 13006105 HNF4A JASPAR yes 70806860
chr19 13006094 13006100 SOX10 JASPAR yes 70806861
chr19 13006105 13006115 SP1 JASPAR yes 70806862
chr19 13006107 13006122 TFAP2C JASPAR yes 70806863
chr19 13006110 13006121 TFAP2A JASPAR yes 70806864
chr19 13006110 13006121 TFAP2B JASPAR yes 70806865
chr19 13006111 13006120 TFAP2A JASPAR yes 70806866
chr19 13006119 13006128 NKX2-8 JASPAR yes 70806867
chr19 13006122 13006140 RARA JASPAR yes 70806868
chr19 13006140 13006154 TLX1 JASPAR yes 70806869
chr19 13006140 13006158 ESR2 JASPAR yes 70806870
chr19 13006141 13006158 ESR1 JASPAR yes 70806871
chr19 13006149 13006163 ZIC1 JASPAR yes 70806872
chr19 13006162 13006168 MZF1 JASPAR yes 70806873
chr19 13006172 13006188 SOX4 JASPAR yes 70806874
chr19 13006195 13006205 ALX3 JASPAR yes 70806875
chr19 13006195 13006205 EN2 JASPAR yes 70806876
chr19 13006195 13006205 ESX1 JASPAR yes 70806877
chr19 13006195 13006205 GBX1 JASPAR yes 70806878
chr19 13006195 13006205 GBX2 JASPAR yes 70806879
chr19 13006195 13006205 GSX1 JASPAR yes 70806880
chr19 13006195 13006205 HESX1 JASPAR yes 70806881
chr19 13006195 13006205 HOXA2 JASPAR yes 70806882
chr19 13006195 13006205 LBX2 JASPAR yes 70806883
chr19 13006195 13006205 LHX2 JASPAR yes 70806884
chr19 13006195 13006205 MIXL1 JASPAR yes 70806885
chr19 13006195 13006205 RAX JASPAR yes 70806886
chr19 13006196 13006200 H1TF2 TRANSFAC yes 70806887
chr19 13006196 13006200 NFE TRANSFAC yes 70806888
chr19 13006196 13006200 SRF TRANSFAC yes 70806889
chr19 13006196 13006204 BARX1 JASPAR yes 70806890
chr19 13006196 13006204 BSX JASPAR yes 70806891
chr19 13006196 13006204 EN1 JASPAR yes 70806892
chr19 13006196 13006204 ISX JASPAR yes 70806893
chr19 13006196 13006204 LHX9 JASPAR yes 70806894
chr19 13006196 13006204 MSX1 JASPAR yes 70806895
chr19 13006196 13006204 MSX2 JASPAR yes 70806896
chr19 13006196 13006204 PRRX1 JASPAR yes 70806897
chr19 13006196 13006204 RAX2 JASPAR yes 70806898
chr19 13006196 13006204 SHOX JASPAR yes 70806899
chr19 13006211 13006220 SNAI2 JASPAR yes 70806900
chr19 13006211 13006221 ID4 JASPAR yes 70806901
chr19 13006211 13006221 TCF3 JASPAR yes 70806902
chr19 13006211 13006221 TCF4 JASPAR yes 70806903
chr19 13006243 13006258 MEF2A JASPAR yes 70806904
chr19 13006244 13006259 MEF2C JASPAR yes 70806905
chr19 13006245 13006257 MEF2A JASPAR yes 70806906
chr19 13006245 13006257 MEF2B JASPAR yes 70806907
chr19 13006245 13006257 MEF2D JASPAR yes 70806908
chr19 13006247 13006251 YY1 TRANSFAC yes 70806909
chr19 13006265 13006277 IRF1 JASPAR yes 70806910
chr19 13006323 13006330 E2F1 TRANSFAC yes 70806911
chr19 13006332 13006350 MAFF JASPAR yes 70806912
chr19 13006334 13006345 NRL JASPAR yes 70806913
chr19 13006334 13006349 MAFK JASPAR yes 70806914
chr19 13006350 13006363 SMAD2 JASPAR yes 70806915
chr19 13006354 13006365 FOSL2 JASPAR yes 70806916
chr19 13006368 13006382 RORA JASPAR yes 70806917
chr19 13006380 13006395 MEF2A JASPAR yes 70806918
chr19 13006381 13006396 MEF2C JASPAR yes 70806919
chr19 13006382 13006394 MEF2A JASPAR yes 70806920
chr19 13006382 13006394 MEF2B JASPAR yes 70806921
chr19 13006382 13006394 MEF2D JASPAR yes 70806922
chr19 13006384 13006388 YY1 TRANSFAC yes 70806923
SNP sites on vista28664[chr19:13006078-13006409]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13006104 rs116838625 C T
HNF4A
5447231
chr19 13006222 rs185205498 T C no 5447232
chr19 13006261 rs190259549 G A,C no 5447233
Genes possibly regulated by vista28664[chr19:13006078-13006409]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 12873817 12983554 - HOOK2 ENSG00000095066.7 12983554 0.8 1.0 17096 77476
chr19 12907634 12912694 - PRDX2 ENSG00000167815.7 12912694 0.59 1.0 17098 6616
chr19 12917394 12924452 + RNASEH2A ENSG00000104889.4 12917394 0.86 0.99 17099 11316
chr19 12936292 12946242 - RTBDN ENSG00000132026.9 12946242 0.99 1.0 17100 40164
chr19 12944765 12985765 + MAST1 ENSG00000105613.5 12944765 0.78 1.0 17101 38687
chr19 12986025 12992282 - DNASE2 ENSG00000105612.4 12992282 0.64 1.0 17102 86204
chr19 12995237 12997995 - KLF1 ENSG00000105610.4 12997995 0.9 1.0 17103 91917
chr19 13001840 13025021 + GCDH ENSG00000105607.8 13001840 0.75 0.99 17104 95762
chr19 13009600 13030090 - SYCE2 ENSG00000161860.7 13030090 0.77 0.99 17105 76319
chr19 13033293 13044851 - FARSA ENSG00000179115.6 13044851 0.79 1.0 17106 61558
chr19 13049392 13055303 + CALR ENSG00000179218.9 13049392 0.69 0.99 17107 57017
chr19 13056669 13064456 + RAD23A ENSG00000179262.5 13056669 0.55 1.0 17108 49740
chr19 13064972 13068050 - GADD45GIP1 ENSG00000179271.1 13068050 0.7 0.99 17109 38359
chr19 13075973 13085567 + DAND5 ENSG00000179284.4 13075973 0.96 0.84 17110 30436
Expression level of Genes
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miRNAs possibly regulated by vista28664[chr19:13006078-13006409]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results