EnhancerDB
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  3. vista28678[chr19:13143095-13143350]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28678[chr19:13143095-13143350]
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Tissue distribution of vista28678
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Transcription factor that possibly regulate vista28678[chr19:13143095-13143350]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13143121 13143129 MEIS3 JASPAR yes 70807821
chr19 13143121 13143129 MEIS3 JASPAR yes 112502777
chr19 13143127 13143148 ZNF263 JASPAR yes 70807822
chr19 13143127 13143148 ZNF263 JASPAR yes 112502778
chr19 13143141 13143156 MEF2C JASPAR yes 70807823
chr19 13143141 13143156 MEF2C JASPAR yes 112502779
chr19 13143142 13143157 MEF2A JASPAR yes 70807824
chr19 13143142 13143157 MEF2A JASPAR yes 112502780
chr19 13143143 13143155 MEF2A JASPAR yes 70807825
chr19 13143143 13143155 MEF2B JASPAR yes 70807826
chr19 13143143 13143155 MEF2D JASPAR yes 70807827
chr19 13143143 13143155 MEF2A JASPAR yes 112502781
chr19 13143143 13143155 MEF2B JASPAR yes 112502782
chr19 13143143 13143155 MEF2D JASPAR yes 112502783
chr19 13143144 13143154 MEF2A JASPAR yes 70807828
chr19 13143144 13143154 MEF2A JASPAR yes 112502784
chr19 13143152 13143167 HNF1A JASPAR yes 70807829
chr19 13143152 13143167 HNF1A JASPAR yes 112502785
chr19 13143153 13143166 HNF1B JASPAR yes 70807830
chr19 13143153 13143166 HNF1B JASPAR yes 112502786
chr19 13143153 13143167 ONECUT1 JASPAR yes 70807831
chr19 13143153 13143167 ONECUT2 JASPAR yes 70807832
chr19 13143153 13143167 ONECUT3 JASPAR yes 70807833
chr19 13143153 13143167 ONECUT1 JASPAR yes 112502787
chr19 13143153 13143167 ONECUT2 JASPAR yes 112502788
chr19 13143153 13143167 ONECUT3 JASPAR yes 112502789
chr19 13143154 13143164 CUX2 JASPAR yes 70807834
chr19 13143154 13143164 CUX2 JASPAR yes 112502790
chr19 13143154 13143165 FOXC1 JASPAR yes 70807835
chr19 13143154 13143165 FOXC1 JASPAR yes 112502791
chr19 13143158 13143169 BATF JASPAR yes 70807836
chr19 13143158 13143169 BATF JASPAR yes 112502792
chr19 13143180 13143184 LFA1 TRANSFAC yes 70807837
chr19 13143180 13143184 LFA1 TRANSFAC yes 112502793
chr19 13143196 13143211 TFAP2A JASPAR yes 70807838
chr19 13143196 13143211 TFAP2C JASPAR yes 70807839
chr19 13143196 13143211 TFAP2A JASPAR yes 112502794
chr19 13143196 13143211 TFAP2C JASPAR yes 112502795
chr19 13143203 13143212 THAP1 JASPAR yes 70807840
chr19 13143203 13143212 THAP1 JASPAR yes 112502796
chr19 13143206 13143210 LFA1 TRANSFAC yes 70807841
chr19 13143206 13143210 LFA1 TRANSFAC yes 112502797
chr19 13143227 13143234 SPIB JASPAR yes 70807842
chr19 13143227 13143234 SPIB JASPAR yes 112502798
chr19 13143243 13143256 SMAD2 JASPAR yes 70807843
chr19 13143243 13143256 SMAD2 JASPAR yes 112502799
chr19 13143248 13143259 USF2 JASPAR yes 70807844
chr19 13143248 13143259 USF2 JASPAR yes 112502800
chr19 13143248 13143260 HES7 JASPAR yes 70807845
chr19 13143248 13143260 PKNOX1 JASPAR yes 70807846
chr19 13143248 13143260 PKNOX2 JASPAR yes 70807847
chr19 13143248 13143260 TGIF2 JASPAR yes 70807848
chr19 13143248 13143260 HES7 JASPAR yes 112502801
chr19 13143248 13143260 PKNOX1 JASPAR yes 112502802
chr19 13143248 13143260 PKNOX2 JASPAR yes 112502803
chr19 13143248 13143260 TGIF2 JASPAR yes 112502804
chr19 13143249 13143259 TFEB JASPAR yes 70807849
chr19 13143249 13143259 TFEC JASPAR yes 70807850
chr19 13143249 13143259 TFEB JASPAR yes 112502805
chr19 13143249 13143259 TFEC JASPAR yes 112502806
chr19 13143249 13143260 USF1 JASPAR yes 70807851
chr19 13143249 13143260 USF1 JASPAR yes 112502807
chr19 13143291 13143304 ZBTB18 JASPAR yes 70807852
chr19 13143291 13143304 ZBTB18 JASPAR yes 112502808
chr19 13143292 13143304 NHLH1 JASPAR yes 70807853
chr19 13143292 13143304 NHLH1 JASPAR yes 112502809
chr19 13143293 13143303 NHLH1 JASPAR yes 70807854
chr19 13143293 13143303 TFAP4 JASPAR yes 70807855
chr19 13143293 13143303 NHLH1 JASPAR yes 112502810
chr19 13143293 13143303 TFAP4 JASPAR yes 112502811
chr19 13143299 13143310 FOXH1 JASPAR yes 70807856
chr19 13143299 13143310 FOXH1 JASPAR yes 112502812
chr19 13143300 13143306 ZNF354C JASPAR yes 70807857
chr19 13143300 13143306 ZNF354C JASPAR yes 112502813
chr19 13143311 13143316 MYC TRANSFAC yes 70807858
chr19 13143311 13143316 MYC TRANSFAC yes 112502814
chr19 13143316 13143331 HNF4A JASPAR yes 70807859
chr19 13143316 13143331 HNF4A JASPAR yes 112502815
chr19 13143317 13143331 NR2F1 JASPAR yes 70807860
chr19 13143317 13143331 RXRB JASPAR yes 70807861
chr19 13143317 13143331 RXRG JASPAR yes 70807862
chr19 13143317 13143331 NR2F1 JASPAR yes 112502816
chr19 13143317 13143331 RXRB JASPAR yes 112502817
chr19 13143317 13143331 RXRG JASPAR yes 112502818
chr19 13143317 13143332 HNF4G JASPAR yes 70807863
chr19 13143317 13143332 HNF4G JASPAR yes 112502819
chr19 13143319 13143334 SOX21 JASPAR yes 70807864
chr19 13143319 13143334 SOX21 JASPAR yes 112502820
chr19 13143320 13143332 IRF1 JASPAR yes 70807865
chr19 13143320 13143332 IRF1 JASPAR yes 112502821
chr19 13143327 13143333 LEF1 TRANSFAC yes 70807866
chr19 13143327 13143333 SOX10 JASPAR yes 70807867
chr19 13143327 13143333 LEF1 TRANSFAC yes 112502822
chr19 13143327 13143333 SOX10 JASPAR yes 112502823
chr19 13143330 13143351 IRF1 JASPAR yes 70807868
chr19 13143330 13143351 IRF1 JASPAR yes 112502824
chr19 13143332 13143347 PRDM1 JASPAR yes 70807869
chr19 13143332 13143347 PRDM1 JASPAR yes 112502825
chr19 13143333 13143337 YY1 TRANSFAC yes 70807870
chr19 13143333 13143337 YY1 TRANSFAC yes 112502826
chr19 13143335 13143349 SPIC JASPAR yes 70807871
chr19 13143335 13143349 SPIC JASPAR yes 112502827
chr19 13143337 13143355 SRF JASPAR yes 70807872
chr19 13143337 13143355 SRF JASPAR yes 112502828
chr19 13143338 13143343 ETS2 TRANSFAC yes 70807873
chr19 13143338 13143343 ETS2 TRANSFAC yes 112502829
SNP sites on vista28678[chr19:13143095-13143350]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13143225 rs112282392 G A no 5448237
chr19 13143237 rs78544495 G A,C no 5448238
chr19 13143255 rs79115867 A G
HES7 PKNOX1 PKNOX2 SMAD2 TFEB TFEC TGIF2 USF1 USF2
5448239
Genes possibly regulated by vista28678[chr19:13143095-13143350]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13033293 13044851 - FARSA ENSG00000179115.6 13044851 0.79 1.0 17106 1756
chr19 13049392 13055303 + CALR ENSG00000179218.9 13049392 0.69 0.99 17107 6297
chr19 13056669 13064456 + RAD23A ENSG00000179262.5 13056669 0.55 1.0 17108 13574
chr19 13064972 13068050 - GADD45GIP1 ENSG00000179271.1 13068050 0.7 0.99 17109 24955
chr19 13075973 13085567 + DAND5 ENSG00000179284.4 13075973 0.96 0.84 17110 32878
chr19 13106422 13209610 + NFIX ENSG00000008441.12 13106422 0.8 0.99 17111 63327
chr19 13209847 13213975 - LYL1 ENSG00000104903.4 13213975 0.92 0.93 17112 29375
chr19 13215716 13228381 - TRMT1 ENSG00000104907.8 13228381 0.6 1.0 17113 14969
chr19 13228917 13251955 + NACC1 ENSG00000160877.5 13228917 0.67 1.0 17114 14433
Expression level of Genes
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miRNAs possibly regulated by vista28678[chr19:13143095-13143350]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results