EnhancerDB
  1. Home
  2. Enhancers
  3. vista28694[chr19:13233224-13233603]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28694[chr19:13233224-13233603]
Back to top
Tissue distribution of vista28694
Back to top
Transcription factor that possibly regulate vista28694[chr19:13233224-13233603]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13233224 13233230 GATA1 TRANSFAC yes 70808665
chr19 13233224 13233232 GATA5 JASPAR yes 70808666
chr19 13233235 13233245 NKX2-3 JASPAR yes 70808667
chr19 13233239 13233248 HIC2 JASPAR yes 70808668
chr19 13233242 13233246 LFA1 TRANSFAC yes 70808669
chr19 13233265 13233277 NHLH1 JASPAR yes 70808670
chr19 13233300 13233305 TFAP2A TRANSFAC yes 70808671
chr19 13233300 13233306 MZF1 JASPAR yes 70808672
chr19 13233311 13233316 TFAP2A TRANSFAC yes 70808673
chr19 13233311 13233317 MZF1 JASPAR yes 70808674
chr19 13233317 13233321 YY1 TRANSFAC yes 70808675
chr19 13233333 13233344 TFAP2A JASPAR yes 70808676
chr19 13233333 13233345 TFAP2A JASPAR yes 70808677
chr19 13233333 13233346 TFAP2A JASPAR yes 70808678
chr19 13233334 13233343 TFAP2A JASPAR yes 70808679
chr19 13233335 13233355 RREB1 JASPAR yes 70808680
chr19 13233336 13233346 SP1 JASPAR yes 70808681
chr19 13233336 13233346 ZNF740 JASPAR yes 70808682
chr19 13233337 13233347 SP1 JASPAR yes 70808683
chr19 13233337 13233347 ZNF740 JASPAR yes 70808684
chr19 13233337 13233357 RREB1 JASPAR yes 70808685
chr19 13233338 13233348 SP1 JASPAR yes 70808686
chr19 13233338 13233348 ZNF740 JASPAR yes 70808687
chr19 13233339 13233349 SP1 JASPAR yes 70808688
chr19 13233339 13233349 ZNF740 JASPAR yes 70808689
chr19 13233340 13233350 SP1 JASPAR yes 70808690
chr19 13233340 13233350 ZNF740 JASPAR yes 70808691
chr19 13233340 13233360 RREB1 JASPAR yes 70808692
chr19 13233341 13233351 SP1 JASPAR yes 70808693
chr19 13233341 13233351 ZNF740 JASPAR yes 70808694
chr19 13233342 13233352 ZNF740 JASPAR yes 70808695
chr19 13233343 13233353 SP1 JASPAR yes 70808696
chr19 13233343 13233353 ZNF740 JASPAR yes 70808697
chr19 13233355 13233374 CTCF JASPAR yes 70808698
chr19 13233369 13233383 RXRB JASPAR yes 70808699
chr19 13233369 13233383 RXRG JASPAR yes 70808700
chr19 13233370 13233380 HOXB13 JASPAR yes 70808701
chr19 13233412 13233423 NFKB1 JASPAR yes 70808702
chr19 13233413 13233417 LFA1 TRANSFAC yes 70808703
chr19 13233413 13233423 NFKB1 JASPAR yes 70808704
chr19 13233421 13233436 RUNX2 JASPAR yes 70808705
chr19 13233427 13233433 SOX10 JASPAR yes 70808706
chr19 13233433 13233445 PBX1 JASPAR yes 70808707
chr19 13233452 13233462 SP1 JASPAR yes 70808708
chr19 13233459 13233464 SP1 TRANSFAC yes 70808709
chr19 13233461 13233466 TFAP2A TRANSFAC yes 70808710
chr19 13233461 13233467 MZF1 JASPAR yes 70808711
chr19 13233461 13233474 NFKB1 JASPAR yes 70808712
chr19 13233461 13233474 NFKB2 JASPAR yes 70808713
chr19 13233462 13233473 NFKB1 JASPAR yes 70808714
chr19 13233463 13233473 NFKB1 JASPAR yes 70808715
chr19 13233463 13233474 NFKB1 JASPAR yes 70808716
chr19 13233464 13233474 RELA JASPAR yes 70808717
chr19 13233464 13233474 REL JASPAR yes 70808718
chr19 13233474 13233478 NFE TRANSFAC yes 70808719
chr19 13233492 13233504 E2F8 JASPAR yes 70808720
chr19 13233516 13233524 MGA JASPAR yes 70808721
chr19 13233516 13233524 TBX15 JASPAR yes 70808722
chr19 13233516 13233524 TBX1 JASPAR yes 70808723
chr19 13233516 13233524 TBX4 JASPAR yes 70808724
chr19 13233516 13233524 TBX5 JASPAR yes 70808725
chr19 13233542 13233553 EBF1 JASPAR yes 70808726
chr19 13233546 13233551 TFAP2A TRANSFAC yes 70808727
chr19 13233546 13233552 MZF1 JASPAR yes 70808728
chr19 13233546 13233559 NFKB2 JASPAR yes 70808729
chr19 13233547 13233558 NFKB1 JASPAR yes 70808730
chr19 13233547 13233560 NFKB1 JASPAR yes 70808731
chr19 13233547 13233560 NFKB2 JASPAR yes 70808732
chr19 13233548 13233559 NFKB1 JASPAR yes 70808733
chr19 13233549 13233559 NFKB1 JASPAR yes 70808734
chr19 13233549 13233559 RELA JASPAR yes 70808735
chr19 13233549 13233559 REL JASPAR yes 70808736
chr19 13233573 13233582 PITX3 JASPAR yes 70808737
chr19 13233573 13233583 GSC2 JASPAR yes 70808738
chr19 13233573 13233583 GSC JASPAR yes 70808739
chr19 13233574 13233582 OTX1 JASPAR yes 70808740
chr19 13233574 13233582 OTX2 JASPAR yes 70808741
chr19 13233574 13233582 RHOXF1 JASPAR yes 70808742
SNP sites on vista28694[chr19:13233224-13233603]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13233256 rs146688210 C G no 5448885
chr19 13233337 rs533143253 CGG C
RREB1 SP1 TFAP2A ZNF740
5448886
chr19 13233337 rs572944720 CGG C
RREB1 SP1 TFAP2A ZNF740
5448887
chr19 13233337 rs769623535 CGG C
RREB1 SP1 TFAP2A ZNF740
5448888
chr19 13233340 rs575450859 G A,C,T
RREB1 SP1 TFAP2A ZNF740
5448889
chr19 13233390 rs35550541 CG C no 5448890
chr19 13233391 rs557977623 G A,C no 5448891
chr19 13233499 rs36083263 G A
E2F8
5448892
chr19 13233594 rs8109318 G A no 5448893
Genes possibly regulated by vista28694[chr19:13233224-13233603]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13209847 13213975 - LYL1 ENSG00000104903.4 13213975 0.92 0.93 17112 80751
chr19 13215716 13228381 - TRMT1 ENSG00000104907.8 13228381 0.6 1.0 17113 95157
chr19 13228917 13251955 + NACC1 ENSG00000160877.5 13228917 0.67 1.0 17114 95693
chr19 13254872 13261197 - STX10 ENSG00000104915.10 13261197 0.58 1.0 17115 72406
chr19 13261229 13265722 + IER2 ENSG00000160888.6 13261229 0.7 1.0 17116 72374
Expression level of Genes
Back to top
miRNAs possibly regulated by vista28694[chr19:13233224-13233603]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results