EnhancerDB
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  3. vista28700[chr19:13274586-13275096]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28700[chr19:13274586-13275096]
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Tissue distribution of vista28700
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Transcription factor that possibly regulate vista28700[chr19:13274586-13275096]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13273159 13276000 POLR2A UCSC Txn Factor no Conserved 108389190
chr19 13273159 13276000 POLR2A UCSC Txn Factor no Conserved 108389191
chr19 13273159 13276000 POLR2A UCSC Txn Factor no Conserved 108389192
chr19 13274594 13274600 MZF1 JASPAR yes 70809316
chr19 13274594 13274600 MZF1 JASPAR yes 112514208
chr19 13274609 13274615 SP1 TRANSFAC yes 70809317
chr19 13274609 13274615 SP1 TRANSFAC yes 112514209
chr19 13274624 13274637 NFKB1 JASPAR yes 70809318
chr19 13274624 13274637 NFKB1 JASPAR yes 112514210
chr19 13274633 13274648 STAT1 JASPAR yes 70809319
chr19 13274633 13274648 STAT1 JASPAR yes 112514211
chr19 13274635 13274646 STAT1 JASPAR yes 70809320
chr19 13274635 13274646 STAT3 JASPAR yes 70809321
chr19 13274635 13274646 STAT1 JASPAR yes 112514212
chr19 13274635 13274646 STAT3 JASPAR yes 112514213
chr19 13274655 13274660 SP1 TRANSFAC yes 70809322
chr19 13274655 13274660 SP1 TRANSFAC yes 112514214
chr19 13274658 13274677 REST JASPAR yes 70809323
chr19 13274658 13274677 REST JASPAR yes 112514215
chr19 13274685 13274689 NFE TRANSFAC yes 70809324
chr19 13274685 13274689 NFE TRANSFAC yes 112514216
chr19 13274705 13274709 H1TF2 TRANSFAC yes 70809325
chr19 13274705 13274709 NFE TRANSFAC yes 70809326
chr19 13274705 13274709 SRF TRANSFAC yes 70809327
chr19 13274705 13274709 H1TF2 TRANSFAC yes 112514217
chr19 13274705 13274709 NFE TRANSFAC yes 112514218
chr19 13274705 13274709 SRF TRANSFAC yes 112514219
chr19 13274710 13274725 NR2C2 JASPAR yes 70809328
chr19 13274710 13274725 NR2C2 JASPAR yes 112514220
chr19 13274713 13274719 SP1 TRANSFAC yes 70809329
chr19 13274713 13274719 SP1 TRANSFAC yes 112514221
chr19 13274713 13274723 SP1 JASPAR yes 70809330
chr19 13274713 13274723 SP1 JASPAR yes 112514222
chr19 13274725 13274741 SOX8 JASPAR yes 70809331
chr19 13274725 13274741 SOX8 JASPAR yes 112514223
chr19 13274738 13274748 HMBOX1 JASPAR yes 70809332
chr19 13274738 13274748 HMBOX1 JASPAR yes 112514224
chr19 13274749 13274758 PITX3 JASPAR yes 70809333
chr19 13274749 13274758 PITX3 JASPAR yes 112514225
chr19 13274749 13274759 GSC2 JASPAR yes 70809334
chr19 13274749 13274759 GSC JASPAR yes 70809335
chr19 13274749 13274759 GSC2 JASPAR yes 112514226
chr19 13274749 13274759 GSC JASPAR yes 112514227
chr19 13274750 13274758 RHOXF1 JASPAR yes 70809336
chr19 13274750 13274758 RHOXF1 JASPAR yes 112514228
chr19 13274753 13274769 ZNF143 JASPAR yes 70809337
chr19 13274753 13274769 ZNF143 JASPAR yes 112514229
chr19 13274761 13274782 ZNF263 JASPAR yes 70809338
chr19 13274761 13274782 ZNF263 JASPAR yes 112514230
chr19 13274766 13274770 NFE TRANSFAC yes 70809339
chr19 13274766 13274770 NFE TRANSFAC yes 112514231
chr19 13274767 13274788 ZNF263 JASPAR yes 70809340
chr19 13274767 13274788 ZNF263 JASPAR yes 112514232
chr19 13274769 13274779 MZF1 JASPAR yes 70809341
chr19 13274769 13274779 MZF1 JASPAR yes 112514233
chr19 13274770 13274791 ZNF263 JASPAR yes 70809342
chr19 13274770 13274791 ZNF263 JASPAR yes 112514234
chr19 13274771 13274781 SP1 JASPAR yes 70809343
chr19 13274771 13274781 SP1 JASPAR yes 112514235
chr19 13274772 13274782 SP1 JASPAR yes 70809344
chr19 13274772 13274782 SP1 JASPAR yes 112514236
chr19 13274776 13274797 ZNF263 JASPAR yes 70809345
chr19 13274776 13274797 ZNF263 JASPAR yes 112514237
chr19 13274811 13274820 TFAP2A JASPAR yes 70809346
chr19 13274811 13274820 TFAP2A JASPAR yes 112514238
chr19 13274819 13274833 ATF7 JASPAR yes 70809347
chr19 13274819 13274833 BATF3 JASPAR yes 70809348
chr19 13274819 13274833 ATF7 JASPAR yes 112514239
chr19 13274819 13274833 BATF3 JASPAR yes 112514240
chr19 13274820 13274832 JDP2 JASPAR yes 70809349
chr19 13274820 13274832 JDP2 JASPAR yes 112514241
chr19 13274829 13274848 PAX5 JASPAR yes 70809350
chr19 13274829 13274848 PAX5 JASPAR yes 112514242
chr19 13274857 13274866 VENTX JASPAR yes 70809351
chr19 13274857 13274866 VENTX JASPAR yes 112514243
chr19 13274857 13274867 ESX1 JASPAR yes 70809352
chr19 13274857 13274867 GBX1 JASPAR yes 70809353
chr19 13274857 13274867 GBX2 JASPAR yes 70809354
chr19 13274857 13274867 GSX1 JASPAR yes 70809355
chr19 13274857 13274867 GSX2 JASPAR yes 70809356
chr19 13274857 13274867 HESX1 JASPAR yes 70809357
chr19 13274857 13274867 LBX2 JASPAR yes 70809358
chr19 13274857 13274867 LHX2 JASPAR yes 70809359
chr19 13274857 13274867 MNX1 JASPAR yes 70809360
chr19 13274857 13274867 RAX JASPAR yes 70809361
chr19 13274857 13274867 ESX1 JASPAR yes 112514244
chr19 13274857 13274867 GBX1 JASPAR yes 112514245
chr19 13274857 13274867 GBX2 JASPAR yes 112514246
chr19 13274857 13274867 GSX1 JASPAR yes 112514247
chr19 13274857 13274867 GSX2 JASPAR yes 112514248
chr19 13274857 13274867 HESX1 JASPAR yes 112514249
chr19 13274857 13274867 LBX2 JASPAR yes 112514250
chr19 13274857 13274867 LHX2 JASPAR yes 112514251
chr19 13274857 13274867 MNX1 JASPAR yes 112514252
chr19 13274857 13274867 RAX JASPAR yes 112514253
chr19 13274858 13274862 H1TF2 TRANSFAC yes 70809362
chr19 13274858 13274862 NFE TRANSFAC yes 70809363
chr19 13274858 13274862 SRF TRANSFAC yes 70809364
chr19 13274858 13274862 H1TF2 TRANSFAC yes 112514254
chr19 13274858 13274862 NFE TRANSFAC yes 112514255
chr19 13274858 13274862 SRF TRANSFAC yes 112514256
chr19 13274858 13274866 BARX1 JASPAR yes 70809365
chr19 13274858 13274866 BSX JASPAR yes 70809366
chr19 13274858 13274866 DLX6 JASPAR yes 70809367
chr19 13274858 13274866 ISX JASPAR yes 70809368
chr19 13274858 13274866 LBX1 JASPAR yes 70809369
chr19 13274858 13274866 LHX9 JASPAR yes 70809370
chr19 13274858 13274866 MSX1 JASPAR yes 70809371
chr19 13274858 13274866 MSX2 JASPAR yes 70809372
chr19 13274858 13274866 NKX6-2 JASPAR yes 70809373
chr19 13274858 13274866 PRRX1 JASPAR yes 70809374
chr19 13274858 13274866 RAX2 JASPAR yes 70809375
chr19 13274858 13274866 SHOX JASPAR yes 70809376
chr19 13274858 13274866 UNCX JASPAR yes 70809377
chr19 13274858 13274866 BARX1 JASPAR yes 112514257
chr19 13274858 13274866 BSX JASPAR yes 112514258
chr19 13274858 13274866 DLX6 JASPAR yes 112514259
chr19 13274858 13274866 ISX JASPAR yes 112514260
chr19 13274858 13274866 LBX1 JASPAR yes 112514261
chr19 13274858 13274866 LHX9 JASPAR yes 112514262
chr19 13274858 13274866 MSX1 JASPAR yes 112514263
chr19 13274858 13274866 MSX2 JASPAR yes 112514264
chr19 13274858 13274866 NKX6-2 JASPAR yes 112514265
chr19 13274858 13274866 PRRX1 JASPAR yes 112514266
chr19 13274858 13274866 RAX2 JASPAR yes 112514267
chr19 13274858 13274866 SHOX JASPAR yes 112514268
chr19 13274858 13274866 UNCX JASPAR yes 112514269
chr19 13274859 13274869 PAX3 JASPAR yes 70809378
chr19 13274859 13274869 PAX3 JASPAR yes 112514270
chr19 13274865 13274873 FEV JASPAR yes 70809379
chr19 13274865 13274873 FEV JASPAR yes 112514271
chr19 13274879 13274883 NFE TRANSFAC yes 70809380
chr19 13274879 13274883 NFE TRANSFAC yes 112514272
chr19 13274883 13274897 PLAG1 JASPAR yes 70809381
chr19 13274883 13274897 PLAG1 JASPAR yes 112514273
chr19 13274900 13274904 NFE TRANSFAC yes 70809382
chr19 13274900 13274904 NFE TRANSFAC yes 112514274
chr19 13274910 13274920 MSC JASPAR yes 70809383
chr19 13274910 13274920 MSC JASPAR yes 112514275
chr19 13274931 13274941 SP1 JASPAR yes 70809384
chr19 13274931 13274941 SP1 JASPAR yes 112514276
chr19 13274932 13274939 SP1 TRANSFAC yes 70809385
chr19 13274932 13274939 SP1 TRANSFAC yes 112514277
chr19 13274932 13274942 SP1 JASPAR yes 70809386
chr19 13274932 13274942 SP1 JASPAR yes 112514278
chr19 13274933 13274940 SP1 TRANSFAC yes 70809387
chr19 13274933 13274940 SP1 TRANSFAC yes 112514279
chr19 13274934 13274939 SP1 TRANSFAC yes 70809388
chr19 13274934 13274939 SP1 TRANSFAC yes 112514280
chr19 13274934 13274940 SP1 TRANSFAC yes 70809389
chr19 13274934 13274940 SP1 TRANSFAC yes 112514281
chr19 13274934 13274941 SP1 TRANSFAC yes 70809390
chr19 13274934 13274941 SP1 TRANSFAC yes 112514282
chr19 13274936 13274949 TFAP2A JASPAR yes 70809391
chr19 13274936 13274949 TFAP2B JASPAR yes 70809392
chr19 13274936 13274949 TFAP2C JASPAR yes 70809393
chr19 13274936 13274949 TFAP2A JASPAR yes 112514283
chr19 13274936 13274949 TFAP2B JASPAR yes 112514284
chr19 13274936 13274949 TFAP2C JASPAR yes 112514285
chr19 13274937 13274949 TFAP2A JASPAR yes 70809394
chr19 13274937 13274949 TFAP2B JASPAR yes 70809395
chr19 13274937 13274949 TFAP2C JASPAR yes 70809396
chr19 13274937 13274949 TFAP2A JASPAR yes 112514286
chr19 13274937 13274949 TFAP2B JASPAR yes 112514287
chr19 13274937 13274949 TFAP2C JASPAR yes 112514288
chr19 13274939 13274948 TFAP2A JASPAR yes 70809397
chr19 13274939 13274948 TFAP2A JASPAR yes 112514289
chr19 13274957 13274966 NFIX JASPAR yes 70809398
chr19 13274957 13274966 NFIX JASPAR yes 112514290
chr19 13274957 13274967 NFIA JASPAR yes 70809399
chr19 13274957 13274967 NFIA JASPAR yes 112514291
chr19 13274959 13274965 NFIC JASPAR yes 70809400
chr19 13274959 13274965 NFIC JASPAR yes 112514292
chr19 13274973 13274984 FLI1 JASPAR yes 70809401
chr19 13274973 13274984 FLI1 JASPAR yes 112514293
chr19 13274975 13274983 EHF JASPAR yes 70809402
chr19 13274975 13274983 EHF JASPAR yes 112514294
chr19 13274982 13274994 ZBTB7B JASPAR yes 70809403
chr19 13274982 13274994 ZBTB7B JASPAR yes 112514295
chr19 13274984 13275004 RREB1 JASPAR yes 70809404
chr19 13274984 13275004 RREB1 JASPAR yes 112514296
chr19 13274985 13274995 SP1 JASPAR yes 70809405
chr19 13274985 13274995 ZNF740 JASPAR yes 70809406
chr19 13274985 13274995 SP1 JASPAR yes 112514297
chr19 13274985 13274995 ZNF740 JASPAR yes 112514298
chr19 13274986 13274996 ZNF740 JASPAR yes 70809407
chr19 13274986 13274996 ZNF740 JASPAR yes 112514299
chr19 13274986 13275006 RREB1 JASPAR yes 70809408
chr19 13274986 13275006 RREB1 JASPAR yes 112514300
chr19 13274987 13275007 RREB1 JASPAR yes 70809409
chr19 13274987 13275007 RREB1 JASPAR yes 112514301
chr19 13274989 13274999 SP1 JASPAR yes 70809410
chr19 13274989 13274999 SP1 JASPAR yes 112514302
chr19 13274991 13275001 ZNF740 JASPAR yes 70809411
chr19 13274991 13275001 ZNF740 JASPAR yes 112514303
chr19 13274997 13275001 H1TF2 TRANSFAC yes 70809412
chr19 13274997 13275001 NFE TRANSFAC yes 70809413
chr19 13274997 13275001 SRF TRANSFAC yes 70809414
chr19 13274997 13275001 H1TF2 TRANSFAC yes 112514304
chr19 13274997 13275001 NFE TRANSFAC yes 112514305
chr19 13274997 13275001 SRF TRANSFAC yes 112514306
chr19 13275009 13275019 SP1 JASPAR yes 70809415
chr19 13275009 13275019 SP1 JASPAR yes 112514307
chr19 13275031 13275049 MAFF JASPAR yes 70809416
chr19 13275031 13275049 MAFF JASPAR yes 112514308
chr19 13275033 13275044 NRL JASPAR yes 70809417
chr19 13275033 13275044 NRL JASPAR yes 112514309
chr19 13275033 13275048 MAFK JASPAR yes 70809418
chr19 13275033 13275048 MAFK JASPAR yes 112514310
chr19 13275075 13275096 ZNF263 JASPAR yes 70809419
chr19 13275075 13275096 ZNF263 JASPAR yes 112514311
chr19 13275078 13275088 SP1 JASPAR yes 70809420
chr19 13275078 13275088 SP1 JASPAR yes 112514312
chr19 13275078 13275099 ZNF263 JASPAR yes 70809421
chr19 13275078 13275099 ZNF263 JASPAR yes 112514313
chr19 13275079 13275086 CEBPA TRANSFAC yes 70809422
chr19 13275079 13275086 CEBPA TRANSFAC yes 112514314
chr19 13275086 13275091 SP1 TRANSFAC yes 70809423
chr19 13275086 13275091 SP1 TRANSFAC yes 112514315
SNP sites on vista28700[chr19:13274586-13275096]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13274633 rs182755798 C T
NFKB1 POLR2A STAT1
5449148
chr19 13274741 rs114300712 T C
HMBOX1 POLR2A SOX8
5449149
chr19 13274813 rs569552406 C A,T
POLR2A TFAP2A
5449150
chr19 13274883 rs192773144 T C
NFE PLAG1 POLR2A
5449151
chr19 13274937 rs371259923 G GC
POLR2A SP1 TFAP2A TFAP2B TFAP2C
5449152
chr19 13274937 rs528291662 G GC
POLR2A SP1 TFAP2A TFAP2B TFAP2C
5449153
chr19 13274944 rs184948725 C T
POLR2A TFAP2A TFAP2B TFAP2C
5449154
chr19 13274986 rs376703029 A AC
POLR2A RREB1 SP1 ZBTB7B ZNF740
5449155
chr19 13274986 rs570038010 A AC
POLR2A RREB1 SP1 ZBTB7B ZNF740
5449156
chr19 13274991 rs192112332 C T
POLR2A RREB1 SP1 ZBTB7B ZNF740
5449157
chr19 13275068 rs189494252 T C
POLR2A
5449158
Genes possibly regulated by vista28700[chr19:13274586-13275096]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13209847 13213975 - LYL1 ENSG00000104903.4 13213975 0.92 0.93 17112 39389
chr19 13215716 13228381 - TRMT1 ENSG00000104907.8 13228381 0.6 1.0 17113 53795
chr19 13228917 13251955 + NACC1 ENSG00000160877.5 13228917 0.67 1.0 17114 54331
chr19 13254872 13261197 - STX10 ENSG00000104915.10 13261197 0.58 1.0 17115 86611
chr19 13261229 13265722 + IER2 ENSG00000160888.6 13261229 0.7 1.0 17116 86643
Expression level of Genes
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miRNAs possibly regulated by vista28700[chr19:13274586-13275096]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results