EnhancerDB
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  3. vista28715[chr19:13917794-13918010]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28715[chr19:13917794-13918010]
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Tissue distribution of vista28715
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Transcription factor that possibly regulate vista28715[chr19:13917794-13918010]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13917829 13917839 GSC2 JASPAR yes 70810160
chr19 13917830 13917838 OTX2 JASPAR yes 70810161
chr19 13917830 13917839 PITX3 JASPAR yes 70810162
chr19 13917840 13917850 SREBF1 JASPAR yes 70810163
chr19 13917847 13917857 HMBOX1 JASPAR yes 70810164
chr19 13917849 13917852 MYB TRANSFAC yes 70810165
chr19 13917861 13917875 RORA JASPAR yes 70810166
chr19 13917869 13917879 HMBOX1 JASPAR yes 70810167
chr19 13917871 13917874 MYB TRANSFAC yes 70810168
chr19 13917879 13917891 HNF1B JASPAR yes 70810169
chr19 13917902 13917912 SP1 JASPAR yes 70810170
chr19 13917904 13917909 SP1 TRANSFAC yes 70810171
chr19 13917910 13917916 ZNF354C JASPAR yes 70810172
chr19 13917912 13917917 GATA2 JASPAR yes 70810173
chr19 13917922 13917936 RORA JASPAR yes 70810174
chr19 13917928 13917934 ESR1 TRANSFAC yes 70810175
chr19 13917930 13917934 ESR1 TRANSFAC yes 70810176
chr19 13917945 13917950 SP1 TRANSFAC yes 70810177
chr19 13917946 13917951 SP1 TRANSFAC yes 70810178
chr19 13917950 13917955 SP1 TRANSFAC yes 70810179
chr19 13917956 13917960 YY1 TRANSFAC yes 70810180
chr19 13917970 13917987 RXRA JASPAR yes 70810181
chr19 13917972 13917982 MLXIPL JASPAR yes 70810182
chr19 13917972 13917982 MLX JASPAR yes 70810183
chr19 13917974 13917979 MYC TRANSFAC yes 70810184
chr19 13917974 13917979 USF1 TRANSFAC yes 70810185
chr19 13917974 13917979 USF2 TRANSFAC yes 70810186
chr19 13917974 13917981 USF1 JASPAR yes 70810187
chr19 13917977 13917983 ZNF354C JASPAR yes 70810188
chr19 13917980 13917985 NFY TRANSFAC yes 70810189
chr19 13917986 13918000 TCF7L2 JASPAR yes 70810190
chr19 13917986 13918001 LEF1 JASPAR yes 70810191
chr19 13917988 13917996 GATA3 JASPAR yes 70810192
chr19 13918005 13918009 LFA1 TRANSFAC yes 70810193
SNP sites on vista28715[chr19:13917794-13918010]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13917801 rs559430728 A C no 5451770
chr19 13917807 rs73511518 G A no 5451771
chr19 13917866 rs12609965 C A
RORA
5451772
chr19 13917867 rs79344405 C A
RORA
5451773
chr19 13917949 rs115476072 C T
SP1
5451774
chr19 13917978 rs137883092 G A
MLX MLXIPL MYC RXRA USF1 USF2 ZNF354C
5451775
Genes possibly regulated by vista28715[chr19:13917794-13918010]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13842574 13874110 + CCDC130 ENSG00000104957.9 13842574 0.62 1.0 17118 24780
chr19 13875346 13885096 + MRI1 ENSG00000037757.9 13875346 0.63 0.99 17119 57552
chr19 13884982 13889276 + C19orf53 ENSG00000104979.4 13884982 0.58 0.99 17120 67188
chr19 13890884 13900972 - AC008686.1 ENSG00000214109.3 13900972 1.0 1.0 17121 83178
chr19 13906274 13943044 + ZSWIM4 ENSG00000132003.5 13906274 0.69 1.0 17122 88480
chr19 13972877 13991571 + NANOS3 ENSG00000187556.6 13972877 0.81 1.0 17123 45133
chr19 13993161 14017265 - C19orf57 ENSG00000132016.7 14017265 0.81 1.0 17124 745
chr19 14017014 14041692 + CC2D1A ENSG00000132024.13 14017014 0.56 1.0 17125 996
Expression level of Genes
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miRNAs possibly regulated by vista28715[chr19:13917794-13918010]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr19 13947140 13947161 - hsa-miR-24-2-5p MIMAT0004497 13953731 0.10192218975857296 0.639089 0.668807 829
Expression level of miRNAs
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