EnhancerDB
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  3. vista28717[chr19:13944359-13944683]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28717[chr19:13944359-13944683]
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Tissue distribution of vista28717
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Transcription factor that possibly regulate vista28717[chr19:13944359-13944683]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13940633 13945906 POLR2A UCSC Txn Factor no Conserved 108389982
chr19 13940633 13945906 POLR2A UCSC Txn Factor no Conserved 108389983
chr19 13944356 13944726 NFYB UCSC Txn Factor no Conserved 108390038
chr19 13944387 13944767 CHD2 UCSC Txn Factor no Conserved 108390047
chr19 13944407 13944743 SP1 UCSC Txn Factor no Conserved 108390055
chr19 13944418 13944738 NFYA UCSC Txn Factor no Conserved 108390059
chr19 13944432 13944702 FOS UCSC Txn Factor no Conserved 108390063
chr19 13944450 13944689 SP2 UCSC Txn Factor no Conserved 108390073
chr19 13944460 13944684 PBX3 UCSC Txn Factor no Conserved 108390076
chr19 13944481 13945124 CTCF UCSC Txn Factor no Conserved 108390086
chr19 13944554 13944839 RAD21 UCSC Txn Factor no Conserved 108390111
chr19 13944350 13944360 SMAD3 JASPAR yes 70810209
chr19 13944350 13944360 SMAD3 JASPAR yes 112535661
chr19 13944389 13944394 SP1 TRANSFAC yes 70810210
chr19 13944389 13944394 SP1 TRANSFAC yes 112535662
chr19 13944389 13944399 REL JASPAR yes 70810211
chr19 13944389 13944399 REL JASPAR yes 112535663
chr19 13944393 13944401 EHF JASPAR yes 70810212
chr19 13944393 13944401 EHF JASPAR yes 112535664
chr19 13944428 13944442 TLX1 JASPAR yes 70810213
chr19 13944428 13944442 TLX1 JASPAR yes 112535665
chr19 13944429 13944435 ESR1 TRANSFAC yes 70810214
chr19 13944429 13944435 ESR1 TRANSFAC yes 112535666
chr19 13944431 13944435 ESR1 TRANSFAC yes 70810215
chr19 13944431 13944435 ESR1 TRANSFAC yes 112535667
chr19 13944447 13944468 ZNF263 JASPAR yes 70810216
chr19 13944447 13944468 ZNF263 JASPAR yes 112535668
chr19 13944448 13944452 LFA1 TRANSFAC yes 70810217
chr19 13944448 13944452 LFA1 TRANSFAC yes 112535669
chr19 13944473 13944484 E2F1 JASPAR yes 70810218
chr19 13944473 13944484 E2F1 JASPAR yes 112535670
chr19 13944486 13944505 CTCF JASPAR yes 70810219
chr19 13944486 13944505 CTCF JASPAR yes 112535671
chr19 13944495 13944504 HiNF-C TRANSFAC yes 70810220
chr19 13944495 13944504 HiNF-C TRANSFAC yes 112535672
chr19 13944495 13944505 SP1 JASPAR yes 70810221
chr19 13944495 13944505 SP1 JASPAR yes 112535673
chr19 13944496 13944502 SP1 TRANSFAC yes 70810222
chr19 13944496 13944502 SP1 TRANSFAC yes 112535674
chr19 13944497 13944502 SP1 TRANSFAC yes 70810223
chr19 13944497 13944502 SP1 TRANSFAC yes 112535675
chr19 13944498 13944503 SP1 TRANSFAC yes 70810224
chr19 13944498 13944503 SP1 TRANSFAC yes 112535676
chr19 13944498 13944504 SP1 TRANSFAC yes 70810225
chr19 13944498 13944504 SP1 TRANSFAC yes 112535677
chr19 13944501 13944506 SP1 TRANSFAC yes 70810226
chr19 13944501 13944506 SP1 TRANSFAC yes 112535678
chr19 13944514 13944521 SP1 TRANSFAC yes 70810227
chr19 13944514 13944521 SP1 TRANSFAC yes 112535679
chr19 13944514 13944524 SP1 JASPAR yes 70810228
chr19 13944514 13944524 SP1 JASPAR yes 112535680
chr19 13944516 13944521 SP1 TRANSFAC yes 70810229
chr19 13944516 13944521 SP1 TRANSFAC yes 112535681
chr19 13944517 13944522 SP1 TRANSFAC yes 70810230
chr19 13944517 13944522 SP1 TRANSFAC yes 112535682
chr19 13944525 13944533 E2F1 JASPAR yes 70810231
chr19 13944525 13944533 E2F1 JASPAR yes 112535683
chr19 13944542 13944547 TFAP2A TRANSFAC yes 70810232
chr19 13944542 13944547 TFAP2A TRANSFAC yes 112535684
chr19 13944542 13944548 MZF1 JASPAR yes 70810233
chr19 13944542 13944548 MZF1 JASPAR yes 112535685
chr19 13944546 13944551 NFY TRANSFAC yes 70810234
chr19 13944546 13944551 NFY TRANSFAC yes 112535686
chr19 13944561 13944566 SP1 TRANSFAC yes 70810235
chr19 13944561 13944566 SP1 TRANSFAC yes 112535687
chr19 13944561 13944567 SP1 TRANSFAC yes 70810236
chr19 13944561 13944567 SP1 TRANSFAC yes 112535688
chr19 13944564 13944570 SP1 TRANSFAC yes 70810237
chr19 13944564 13944570 SP1 TRANSFAC yes 112535689
chr19 13944572 13944581 NKX2-8 JASPAR yes 70810238
chr19 13944572 13944581 NKX2-8 JASPAR yes 112535690
chr19 13944575 13944590 NFYB JASPAR yes 70810239
chr19 13944575 13944590 NFYB JASPAR yes 112535691
chr19 13944577 13944593 NFYA JASPAR yes 70810240
chr19 13944577 13944593 NFYA JASPAR yes 112535692
chr19 13944578 13944596 NFYA JASPAR yes 70810241
chr19 13944578 13944596 NFYA JASPAR yes 112535693
chr19 13944582 13944586 H1TF2 TRANSFAC yes 70810242
chr19 13944582 13944586 NFE TRANSFAC yes 70810243
chr19 13944582 13944586 SRF TRANSFAC yes 70810244
chr19 13944582 13944586 H1TF2 TRANSFAC yes 112535694
chr19 13944582 13944586 NFE TRANSFAC yes 112535695
chr19 13944582 13944586 SRF TRANSFAC yes 112535696
chr19 13944596 13944606 SP1 JASPAR yes 70810245
chr19 13944596 13944606 SP1 JASPAR yes 112535697
chr19 13944605 13944611 NFE2 TRANSFAC yes 70810246
chr19 13944605 13944611 NFE2 TRANSFAC yes 112535698
chr19 13944608 13944614 SP1 TRANSFAC yes 70810247
chr19 13944608 13944614 SP1 TRANSFAC yes 112535699
chr19 13944634 13944644 GCM2 JASPAR yes 70810248
chr19 13944634 13944644 GCM2 JASPAR yes 112535700
chr19 13944636 13944645 THAP1 JASPAR yes 70810249
chr19 13944636 13944645 THAP1 JASPAR yes 112535701
chr19 13944639 13944644 SP1 TRANSFAC yes 70810250
chr19 13944639 13944644 SP1 TRANSFAC yes 112535702
chr19 13944639 13944651 HINFP JASPAR yes 70810251
chr19 13944639 13944651 HINFP JASPAR yes 112535703
chr19 13944648 13944661 NFKB2 JASPAR yes 70810252
chr19 13944648 13944661 NFKB2 JASPAR yes 112535704
chr19 13944649 13944659 NFKB1 JASPAR yes 70810253
chr19 13944649 13944659 NFKB1 JASPAR yes 112535705
chr19 13944649 13944660 NFKB1 JASPAR yes 70810254
chr19 13944649 13944660 NFKB1 JASPAR yes 112535706
chr19 13944653 13944659 NFE2 TRANSFAC yes 70810255
chr19 13944653 13944659 NFE2 TRANSFAC yes 112535707
chr19 13944670 13944689 CTCF JASPAR yes 70810256
chr19 13944670 13944689 CTCF JASPAR yes 112535708
SNP sites on vista28717[chr19:13944359-13944683]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13944478 rs2594716 C T
CHD2 E2F1 FOS NFYA NFYB PBX3 POLR2A SP1 SP2
5451871
chr19 13944484 rs569156224 G A
CHD2 CTCF E2F1 FOS NFYA NFYB PBX3 POLR2A SP1 SP2
5451872
chr19 13944525 rs574737296 CTT C
CHD2 CTCF E2F1 FOS NFYA NFYB PBX3 POLR2A SP1 SP2
5451873
chr19 13944558 rs12978798 C G,T
CHD2 CTCF FOS NFYA NFYB PBX3 POLR2A RAD21 SP1 SP2
5451874
chr19 13944593 rs192503253 A G
CHD2 CTCF FOS NFYA NFYB PBX3 POLR2A RAD21 SP1 SP2
5451875
chr19 13944626 rs540380208 CA C
CHD2 CTCF FOS NFYA NFYB PBX3 POLR2A RAD21 SP1 SP2
5451876
chr19 13944628 rs542462581 G C
CHD2 CTCF FOS NFYA NFYB PBX3 POLR2A RAD21 SP1 SP2
5451877
Genes possibly regulated by vista28717[chr19:13944359-13944683]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13875346 13885096 + MRI1 ENSG00000037757.9 13875346 0.63 0.99 17119 30987
chr19 13884982 13889276 + C19orf53 ENSG00000104979.4 13884982 0.58 0.99 17120 40623
chr19 13890884 13900972 - AC008686.1 ENSG00000214109.3 13900972 1.0 1.0 17121 56613
chr19 13906274 13943044 + ZSWIM4 ENSG00000132003.5 13906274 0.69 1.0 17122 61915
chr19 13972877 13991571 + NANOS3 ENSG00000187556.6 13972877 0.81 1.0 17123 71806
chr19 13993161 14017265 - C19orf57 ENSG00000132016.7 14017265 0.81 1.0 17124 27418
chr19 14017014 14041692 + CC2D1A ENSG00000132024.13 14017014 0.56 1.0 17125 27669
Expression level of Genes
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miRNAs possibly regulated by vista28717[chr19:13944359-13944683]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results