EnhancerDB
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  3. vista28721[chr19:13959901-13960035]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28721[chr19:13959901-13960035]
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Tissue distribution of vista28721
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Transcription factor that possibly regulate vista28721[chr19:13959901-13960035]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13959902 13959905 MYB TRANSFAC yes 70810836
chr19 13959902 13959905 MYB TRANSFAC yes 112538125
chr19 13959909 13959915 YY1 JASPAR yes 70810837
chr19 13959909 13959915 YY1 JASPAR yes 112538126
chr19 13959915 13959921 MZF1 JASPAR yes 70810838
chr19 13959915 13959921 MZF1 JASPAR yes 112538127
chr19 13959928 13959932 YY1 TRANSFAC yes 70810839
chr19 13959928 13959932 YY1 TRANSFAC yes 112538128
chr19 13959935 13959948 DUXA JASPAR yes 70810840
chr19 13959935 13959948 DUXA JASPAR yes 112538129
chr19 13959936 13959947 DUX4 JASPAR yes 70810841
chr19 13959936 13959947 DUX4 JASPAR yes 112538130
chr19 13959946 13959950 ESR1 TRANSFAC yes 70810842
chr19 13959946 13959950 ESR1 TRANSFAC yes 112538131
chr19 13959946 13959957 USF1 JASPAR yes 70810843
chr19 13959946 13959957 USF1 JASPAR yes 112538132
chr19 13959947 13959957 TFE3 JASPAR yes 70810844
chr19 13959947 13959957 TFEB JASPAR yes 70810845
chr19 13959947 13959957 TFEC JASPAR yes 70810846
chr19 13959947 13959957 TFE3 JASPAR yes 112538133
chr19 13959947 13959957 TFEB JASPAR yes 112538134
chr19 13959947 13959957 TFEC JASPAR yes 112538135
chr19 13959947 13959958 USF2 JASPAR yes 70810847
chr19 13959947 13959958 USF2 JASPAR yes 112538136
chr19 13959966 13959970 YY1 TRANSFAC yes 70810848
chr19 13959966 13959970 YY1 TRANSFAC yes 112538137
chr19 13959989 13959993 ESR1 TRANSFAC yes 70810849
chr19 13959989 13959993 ESR1 TRANSFAC yes 112538138
chr19 13960000 13960012 NHLH1 JASPAR yes 70810850
chr19 13960000 13960012 NHLH1 JASPAR yes 112538139
chr19 13960001 13960011 MSC JASPAR yes 70810851
chr19 13960001 13960011 NHLH1 JASPAR yes 70810852
chr19 13960001 13960011 MSC JASPAR yes 112538140
chr19 13960001 13960011 NHLH1 JASPAR yes 112538141
chr19 13960008 13960012 H4TF2 TRANSFAC yes 70810853
chr19 13960008 13960012 H4TF2 TRANSFAC yes 112538142
chr19 13960034 13960039 GATA1 TRANSFAC yes 70810854
chr19 13960034 13960039 GATA1 TRANSFAC yes 112538143
SNP sites on vista28721[chr19:13959901-13960035]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13960011 rs33911920 TC T
H4TF2 MSC NHLH1
5452100
chr19 13960011 rs397826588 TC T
H4TF2 MSC NHLH1
5452101
chr19 13960019 rs540770415 C T no 5452102
Genes possibly regulated by vista28721[chr19:13959901-13960035]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13875346 13885096 + MRI1 ENSG00000037757.9 13875346 0.63 0.99 17119 15445
chr19 13884982 13889276 + C19orf53 ENSG00000104979.4 13884982 0.58 0.99 17120 25081
chr19 13890884 13900972 - AC008686.1 ENSG00000214109.3 13900972 1.0 1.0 17121 41071
chr19 13906274 13943044 + ZSWIM4 ENSG00000132003.5 13906274 0.69 1.0 17122 46373
chr19 13972877 13991571 + NANOS3 ENSG00000187556.6 13972877 0.81 1.0 17123 87158
chr19 13993161 14017265 - C19orf57 ENSG00000132016.7 14017265 0.81 1.0 17124 42770
chr19 14017014 14041692 + CC2D1A ENSG00000132024.13 14017014 0.56 1.0 17125 43021
Expression level of Genes
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miRNAs possibly regulated by vista28721[chr19:13959901-13960035]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results