EnhancerDB
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  3. vista28727[chr19:13997855-13998026]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28727[chr19:13997855-13998026]
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Tissue distribution of vista28727
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Transcription factor that possibly regulate vista28727[chr19:13997855-13998026]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13997858 13997870 IRF1 JASPAR yes 70811257
chr19 13997858 13997870 IRF1 JASPAR yes 112540633
chr19 13997863 13997866 MYB TRANSFAC yes 70811258
chr19 13997863 13997866 MYB TRANSFAC yes 112540634
chr19 13997891 13997906 RUNX2 JASPAR yes 70811259
chr19 13997891 13997906 RUNX2 JASPAR yes 112540635
chr19 13997912 13997916 NFE TRANSFAC yes 70811260
chr19 13997912 13997916 NFE TRANSFAC yes 112540636
chr19 13997919 13997930 NFE2L2 JASPAR yes 70811261
chr19 13997919 13997930 NFE2L2 JASPAR yes 112540637
chr19 13997926 13997943 RARA JASPAR yes 70811262
chr19 13997926 13997943 RXRA JASPAR yes 70811263
chr19 13997926 13997943 RARA JASPAR yes 112540638
chr19 13997926 13997943 RXRA JASPAR yes 112540639
chr19 13997938 13997944 SP1 TRANSFAC yes 70811264
chr19 13997938 13997944 SP1 TRANSFAC yes 112540640
chr19 13997938 13997948 SP1 JASPAR yes 70811265
chr19 13997938 13997948 SP1 JASPAR yes 112540641
chr19 13997949 13997964 ZIC4 JASPAR yes 70811266
chr19 13997949 13997964 ZIC4 JASPAR yes 112540642
chr19 13997950 13997964 ZIC1 JASPAR yes 70811267
chr19 13997950 13997964 ZIC1 JASPAR yes 112540643
chr19 13997963 13997978 JUND JASPAR yes 70811268
chr19 13997963 13997978 JUND JASPAR yes 112540644
chr19 13997964 13997977 JUN JASPAR yes 70811269
chr19 13997964 13997977 JUN JASPAR yes 112540645
chr19 13997967 13997980 NR2F1 JASPAR yes 70811270
chr19 13997967 13997980 NR2F1 JASPAR yes 112540646
chr19 13997968 13997976 CREB1 JASPAR yes 70811271
chr19 13997968 13997976 CREB1 JASPAR yes 112540647
chr19 13997970 13997987 RARA JASPAR yes 70811272
chr19 13997970 13997987 RARA JASPAR yes 112540648
chr19 13997971 13997975 ESR1 TRANSFAC yes 70811273
chr19 13997971 13997975 ESR1 TRANSFAC yes 112540649
chr19 13997978 13997996 MAFF JASPAR yes 70811274
chr19 13997978 13997996 MAFF JASPAR yes 112540650
chr19 13997980 13997995 MAFK JASPAR yes 70811275
chr19 13997980 13997995 MAFK JASPAR yes 112540651
chr19 13998009 13998015 TCF4 TRANSFAC yes 70811276
chr19 13998009 13998015 TCF4 TRANSFAC yes 112540652
chr19 13998014 13998032 ESR2 JASPAR yes 70811277
chr19 13998014 13998032 ESR2 JASPAR yes 112540653
SNP sites on vista28727[chr19:13997855-13998026]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13997977 rs116445159 G C,T
JUN JUND NR2F1 RARA
5452418
chr19 13998003 rs530242605 G A no 5452419
Genes possibly regulated by vista28727[chr19:13997855-13998026]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13890884 13900972 - AC008686.1 ENSG00000214109.3 13900972 1.0 1.0 17121 3117
chr19 13906274 13943044 + ZSWIM4 ENSG00000132003.5 13906274 0.69 1.0 17122 8419
chr19 13972877 13991571 + NANOS3 ENSG00000187556.6 13972877 0.81 1.0 17123 75022
chr19 13993161 14017265 - C19orf57 ENSG00000132016.7 14017265 0.81 1.0 17124 80761
chr19 14017014 14041692 + CC2D1A ENSG00000132024.13 14017014 0.56 1.0 17125 81012
chr19 14042000 14064204 - PODNL1 ENSG00000132000.7 14064204 0.89 0.99 17126 33822
chr19 14063304 14072254 + DCAF15 ENSG00000132017.6 14063304 0.67 1.0 17127 34722
Expression level of Genes
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miRNAs possibly regulated by vista28727[chr19:13997855-13998026]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results