EnhancerDB
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  3. vista28733[chr19:14172809-14173223]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28733[chr19:14172809-14173223]
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Tissue distribution of vista28733
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Transcription factor that possibly regulate vista28733[chr19:14172809-14173223]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 14172844 14172859 TFAP2C JASPAR yes 70811583
chr19 14172845 14172857 TFAP2A JASPAR yes 70811584
chr19 14172845 14172857 TFAP2B JASPAR yes 70811585
chr19 14172855 14172868 TFAP2A JASPAR yes 70811586
chr19 14172855 14172868 TFAP2B JASPAR yes 70811587
chr19 14172855 14172868 TFAP2C JASPAR yes 70811588
chr19 14172886 14172896 SP1 JASPAR yes 70811589
chr19 14172886 14172896 ZNF740 JASPAR yes 70811590
chr19 14172887 14172897 SP1 JASPAR yes 70811591
chr19 14172887 14172897 ZNF740 JASPAR yes 70811592
chr19 14172888 14172898 ZNF740 JASPAR yes 70811593
chr19 14172894 14172909 ZIC4 JASPAR yes 70811594
chr19 14172898 14172907 THAP1 JASPAR yes 70811595
chr19 14172901 14172906 SP1 TRANSFAC yes 70811596
chr19 14172902 14172907 SP1 TRANSFAC yes 70811597
chr19 14172902 14172911 HIC2 JASPAR yes 70811598
chr19 14172905 14172909 LFA1 TRANSFAC yes 70811599
chr19 14172921 14172925 H4TF2 TRANSFAC yes 70811600
chr19 14172944 14172949 SP1 TRANSFAC yes 70811601
chr19 14172966 14172976 SP1 JASPAR yes 70811602
chr19 14172968 14172980 INSM1 JASPAR yes 70811603
chr19 14172983 14172987 LFA1 TRANSFAC yes 70811604
chr19 14172992 14172997 TFAP2A TRANSFAC yes 70811605
chr19 14172992 14172998 MZF1 JASPAR yes 70811606
chr19 14172998 14173019 REST JASPAR yes 70811607
chr19 14173002 14173006 NFE TRANSFAC yes 70811608
chr19 14173004 14173014 MSC JASPAR yes 70811609
chr19 14173004 14173014 TFAP4 JASPAR yes 70811610
chr19 14173009 14173013 NFE TRANSFAC yes 70811611
chr19 14173014 14173030 POU4F2 JASPAR yes 70811612
chr19 14173014 14173030 POU4F3 JASPAR yes 70811613
chr19 14173016 14173030 POU4F1 JASPAR yes 70811614
chr19 14173016 14173031 HNF1A JASPAR yes 70811615
chr19 14173017 14173030 HNF1B JASPAR yes 70811616
chr19 14173017 14173031 POU4F1 JASPAR yes 70811617
chr19 14173017 14173033 POU4F3 JASPAR yes 70811618
chr19 14173028 14173043 TFAP2A JASPAR yes 70811619
chr19 14173028 14173043 TFAP2C JASPAR yes 70811620
chr19 14173043 14173049 LEF1 TRANSFAC yes 70811621
chr19 14173043 14173049 SOX10 JASPAR yes 70811622
chr19 14173052 14173064 NHLH1 JASPAR yes 70811623
chr19 14173053 14173063 NHLH1 JASPAR yes 70811624
chr19 14173066 14173072 ETS1 JASPAR yes 70811625
chr19 14173067 14173075 FOXO3 JASPAR yes 70811626
chr19 14173076 14173086 TBR1 JASPAR yes 70811627
chr19 14173090 14173094 ESR1 TRANSFAC yes 70811628
chr19 14173098 14173108 ZNF740 JASPAR yes 70811629
chr19 14173119 14173132 NFKB1 JASPAR yes 70811630
chr19 14173119 14173132 NFKB2 JASPAR yes 70811631
chr19 14173125 14173137 INSM1 JASPAR yes 70811632
chr19 14173131 14173150 CTCF JASPAR yes 70811633
chr19 14173148 14173152 YY1 TRANSFAC yes 70811634
chr19 14173155 14173165 NFIA JASPAR yes 70811635
chr19 14173156 14173165 NFIX JASPAR yes 70811636
chr19 14173157 14173163 NFIC JASPAR yes 70811637
chr19 14173165 14173169 H1TF2 TRANSFAC yes 70811638
chr19 14173165 14173169 NFE TRANSFAC yes 70811639
chr19 14173165 14173169 SRF TRANSFAC yes 70811640
chr19 14173180 14173194 TLX1 JASPAR yes 70811641
chr19 14173181 14173195 TLX1 JASPAR yes 70811642
chr19 14173189 14173195 NFIC JASPAR yes 70811643
SNP sites on vista28733[chr19:14172809-14173223]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 14172861 rs79208601 C T
TFAP2A TFAP2B TFAP2C
5453565
chr19 14172896 rs7252372 G C,T
SP1 ZIC4 ZNF740
5453566
chr19 14172897 rs184078716 G A,C
SP1 ZIC4 ZNF740
5453567
chr19 14172921 rs10415758 A T
H4TF2
5453568
chr19 14172950 rs541904284 G T no 5453569
chr19 14172951 rs10421262 T G no 5453570
chr19 14172976 rs575316501 G A
INSM1 SP1
5453571
chr19 14173101 rs546660560 G C
ZNF740
5453572
chr19 14173115 rs150523824 T C no 5453573
Genes possibly regulated by vista28733[chr19:14172809-14173223]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 14072350 14117851 - RFX1 ENSG00000132005.4 14117851 0.68 1.0 17128 45042
chr19 14138960 14141854 + RLN3 ENSG00000171136.6 14138960 0.93 0.99 17129 66151
chr19 14142560 14163743 + IL27RA ENSG00000104998.2 14142560 0.8 1.0 17130 69751
chr19 14164177 14169971 - PALM3 ENSG00000187867.4 14169971 0.86 0.99 17131 97162
chr19 14183348 14185874 + hsa-mir-1199 ENSG00000141854.3 14183348 0.81 1.0 17132 89875
chr19 14192431 14196687 - C19orf67 ENSG00000188032.5 14196687 0.8 0.94 17133 76536
chr19 14198652 14201848 - SAMD1 ENSG00000141858.7 14201848 0.76 0.99 17134 71375
chr19 14202500 14228896 - PRKACA ENSG00000072062.9 14228896 0.69 0.99 17135 44327
chr19 14230321 14247768 - ASF1B ENSG00000105011.4 14247768 0.97 1.0 17136 25455
Expression level of Genes
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miRNAs possibly regulated by vista28733[chr19:14172809-14173223]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr19 14184237 14184257 + hsa-miR-1199-3p MIMAT0031120 14183597 0.010427870002338087 0.0 0.0 834
Expression level of miRNAs
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