EnhancerDB
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  3. vista28839[chr19:16696641-16697052]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28839[chr19:16696641-16697052]
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Tissue distribution of vista28839
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Transcription factor that possibly regulate vista28839[chr19:16696641-16697052]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 16694892 16701219 POLR2A UCSC Txn Factor no Conserved 108393986
chr19 16694892 16701219 POLR2A UCSC Txn Factor no Conserved 108393987
chr19 16696536 16696916 TBP UCSC Txn Factor no Conserved 108394006
chr19 16696594 16697168 RUNX3 UCSC Txn Factor no Conserved 108394009
chr19 16696597 16697012 RELA UCSC Txn Factor no Conserved 108394011
chr19 16696641 16697050 ATF2 UCSC Txn Factor no Conserved 108394013
chr19 16696661 16696981 SPI1 UCSC Txn Factor no Conserved 108394019
chr19 16696669 16696959 ZNF143 UCSC Txn Factor no Conserved 108394021
chr19 16696718 16697164 EBF1 UCSC Txn Factor no Conserved 108394028
chr19 16696664 16696670 TCF4 TRANSFAC yes 70817340
chr19 16696664 16696670 TCF4 TRANSFAC yes 112661114
chr19 16696673 16696678 SP1 TRANSFAC yes 70817341
chr19 16696673 16696678 SP1 TRANSFAC yes 112661115
chr19 16696711 16696724 ELF1 JASPAR yes 70817342
chr19 16696711 16696724 ELF1 JASPAR yes 112661116
chr19 16696720 16696731 HOXA10 JASPAR yes 70817343
chr19 16696720 16696731 HOXA10 JASPAR yes 112661117
chr19 16696721 16696730 CDX1 JASPAR yes 70817344
chr19 16696721 16696730 CDX1 JASPAR yes 112661118
chr19 16696721 16696732 CDX2 JASPAR yes 70817345
chr19 16696721 16696732 CDX2 JASPAR yes 112661119
chr19 16696739 16696746 NKX3-1 JASPAR yes 70817346
chr19 16696739 16696746 NKX3-1 JASPAR yes 112661120
chr19 16696744 16696759 TFAP2A JASPAR yes 70817347
chr19 16696744 16696759 TFAP2C JASPAR yes 70817348
chr19 16696744 16696759 TFAP2A JASPAR yes 112661121
chr19 16696744 16696759 TFAP2C JASPAR yes 112661122
chr19 16696746 16696761 TFAP2A JASPAR yes 70817349
chr19 16696746 16696761 TFAP2C JASPAR yes 70817350
chr19 16696746 16696761 TFAP2A JASPAR yes 112661123
chr19 16696746 16696761 TFAP2C JASPAR yes 112661124
chr19 16696747 16696758 TFAP2A JASPAR yes 70817351
chr19 16696747 16696758 TFAP2B JASPAR yes 70817352
chr19 16696747 16696758 TFAP2A JASPAR yes 112661125
chr19 16696747 16696758 TFAP2B JASPAR yes 112661126
chr19 16696759 16696765 JUN TRANSFAC yes 70817353
chr19 16696759 16696765 JUN TRANSFAC yes 112661127
chr19 16696761 16696771 MEOX1 JASPAR yes 70817354
chr19 16696761 16696771 MEOX2 JASPAR yes 70817355
chr19 16696761 16696771 POU6F1 JASPAR yes 70817356
chr19 16696761 16696771 MEOX1 JASPAR yes 112661128
chr19 16696761 16696771 MEOX2 JASPAR yes 112661129
chr19 16696761 16696771 POU6F1 JASPAR yes 112661130
chr19 16696764 16696772 HOXA5 JASPAR yes 70817357
chr19 16696764 16696772 HOXA5 JASPAR yes 112661131
chr19 16696773 16696778 TFAP2A TRANSFAC yes 70817358
chr19 16696773 16696778 TFAP2A TRANSFAC yes 112661132
chr19 16696773 16696779 MZF1 JASPAR yes 70817359
chr19 16696773 16696779 MZF1 JASPAR yes 112661133
chr19 16696774 16696784 NFKB1 JASPAR yes 70817360
chr19 16696774 16696784 RELA JASPAR yes 70817361
chr19 16696774 16696784 REL JASPAR yes 70817362
chr19 16696774 16696784 NFKB1 JASPAR yes 112661134
chr19 16696774 16696784 RELA JASPAR yes 112661135
chr19 16696774 16696784 REL JASPAR yes 112661136
chr19 16696774 16696785 NFKB1 JASPAR yes 70817363
chr19 16696774 16696785 NFKB1 JASPAR yes 112661137
chr19 16696775 16696785 RELA JASPAR yes 70817364
chr19 16696775 16696785 RELA JASPAR yes 112661138
chr19 16696777 16696782 H4TF1 TRANSFAC yes 70817365
chr19 16696777 16696782 H4TF1 TRANSFAC yes 112661139
chr19 16696797 16696818 IRF1 JASPAR yes 70817366
chr19 16696797 16696818 IRF1 JASPAR yes 112661140
chr19 16696800 16696805 ETS2 TRANSFAC yes 70817367
chr19 16696800 16696805 ETS2 TRANSFAC yes 112661141
chr19 16696801 16696815 STAT1 JASPAR yes 70817368
chr19 16696801 16696815 STAT1 JASPAR yes 112661142
chr19 16696801 16696816 STAT2 JASPAR yes 70817369
chr19 16696801 16696816 STAT2 JASPAR yes 112661143
chr19 16696813 16696828 STAT2 JASPAR yes 70817370
chr19 16696813 16696828 STAT2 JASPAR yes 112661144
chr19 16696846 16696867 ZNF263 JASPAR yes 70817371
chr19 16696846 16696867 ZNF263 JASPAR yes 112661145
chr19 16696851 16696855 YY1 TRANSFAC yes 70817372
chr19 16696851 16696855 YY1 TRANSFAC yes 112661146
chr19 16696859 16696872 ZBTB18 JASPAR yes 70817373
chr19 16696859 16696872 ZBTB18 JASPAR yes 112661147
chr19 16696871 16696882 E2F6 JASPAR yes 70817374
chr19 16696871 16696882 E2F6 JASPAR yes 112661148
chr19 16696878 16696888 SP1 JASPAR yes 70817375
chr19 16696878 16696888 SP1 JASPAR yes 112661149
chr19 16696879 16696885 SP1 TRANSFAC yes 70817376
chr19 16696879 16696885 SP1 TRANSFAC yes 112661150
chr19 16696891 16696897 MZF1 JASPAR yes 70817377
chr19 16696891 16696897 MZF1 JASPAR yes 112661151
chr19 16696896 16696910 EBF1 JASPAR yes 70817378
chr19 16696896 16696910 EBF1 JASPAR yes 112661152
chr19 16696897 16696908 EBF1 JASPAR yes 70817379
chr19 16696897 16696908 EBF1 JASPAR yes 112661153
chr19 16696898 16696909 EBF1 JASPAR yes 70817380
chr19 16696898 16696909 EBF1 JASPAR yes 112661154
chr19 16696907 16696920 ZBTB18 JASPAR yes 70817381
chr19 16696907 16696920 ZBTB18 JASPAR yes 112661155
chr19 16696908 16696920 NHLH1 JASPAR yes 70817382
chr19 16696908 16696920 NHLH1 JASPAR yes 112661156
chr19 16696909 16696919 NHLH1 JASPAR yes 70817383
chr19 16696909 16696919 NHLH1 JASPAR yes 112661157
chr19 16696926 16696939 NFKB1 JASPAR yes 70817384
chr19 16696926 16696939 NFKB2 JASPAR yes 70817385
chr19 16696926 16696939 NFKB1 JASPAR yes 112661158
chr19 16696926 16696939 NFKB2 JASPAR yes 112661159
chr19 16696927 16696938 NFKB1 JASPAR yes 70817386
chr19 16696927 16696938 NFKB1 JASPAR yes 112661160
chr19 16696946 16696964 ESR1 JASPAR yes 70817387
chr19 16696946 16696964 ESR1 JASPAR yes 112661161
chr19 16696960 16696964 H1TF2 TRANSFAC yes 70817388
chr19 16696960 16696964 NFE TRANSFAC yes 70817389
chr19 16696960 16696964 SRF TRANSFAC yes 70817390
chr19 16696960 16696964 H1TF2 TRANSFAC yes 112661162
chr19 16696960 16696964 NFE TRANSFAC yes 112661163
chr19 16696960 16696964 SRF TRANSFAC yes 112661164
chr19 16696960 16696966 NFYC TRANSFAC yes 70817391
chr19 16696960 16696966 NFYC TRANSFAC yes 112661165
chr19 16696965 16696979 EBF1 JASPAR yes 70817392
chr19 16696965 16696979 EBF1 JASPAR yes 112661166
chr19 16696966 16696977 EBF1 JASPAR yes 70817393
chr19 16696966 16696977 EBF1 JASPAR yes 112661167
chr19 16696986 16696990 LFA1 TRANSFAC yes 70817394
chr19 16696986 16696990 LFA1 TRANSFAC yes 112661168
chr19 16696990 16697009 PAX5 JASPAR yes 70817395
chr19 16696990 16697009 PAX5 JASPAR yes 112661169
chr19 16697000 16697004 LFA1 TRANSFAC yes 70817396
chr19 16697000 16697004 LFA1 TRANSFAC yes 112661170
chr19 16697027 16697032 SP1 TRANSFAC yes 70817397
chr19 16697027 16697032 SP1 TRANSFAC yes 112661171
chr19 16697033 16697047 TLX1 JASPAR yes 70817398
chr19 16697033 16697047 TLX1 JASPAR yes 112661172
chr19 16697040 16697049 NFIX JASPAR yes 70817399
chr19 16697040 16697049 NFIX JASPAR yes 112661173
chr19 16697040 16697050 NFIA JASPAR yes 70817400
chr19 16697040 16697050 NFIA JASPAR yes 112661174
chr19 16697042 16697048 NFIC JASPAR yes 70817401
chr19 16697042 16697048 NFIC JASPAR yes 112661175
chr19 16697043 16697061 TP63 JASPAR yes 70817402
chr19 16697043 16697061 TP73 JASPAR yes 70817403
chr19 16697043 16697061 TP63 JASPAR yes 112661176
chr19 16697043 16697061 TP73 JASPAR yes 112661177
chr19 16697050 16697064 XBP1 JASPAR yes 70817404
chr19 16697050 16697064 XBP1 JASPAR yes 112661178
chr19 16697051 16697065 BATF3 JASPAR yes 70817405
chr19 16697051 16697065 CREB3 JASPAR yes 70817406
chr19 16697051 16697065 BATF3 JASPAR yes 112661179
chr19 16697051 16697065 CREB3 JASPAR yes 112661180
SNP sites on vista28839[chr19:16696641-16697052]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
Genes possibly regulated by vista28839[chr19:16696641-16697052]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 16589868 16607003 - CALR3 ENSG00000269058.1 16607003 0.82 0.91 17188 10362
chr19 16589878 16739015 - CTD-3222D19.2 ENSG00000141979.4 16739015 0.0 0.96 17189 58037
chr19 16607122 16632163 + C19orf44 ENSG00000105072.4 16607122 0.78 1.0 17190 10481
chr19 16628700 16653341 - CHERP ENSG00000085872.10 16653341 0.63 1.0 17191 56700
chr19 16660642 16683193 - SLC35E1 ENSG00000127526.9 16683193 0.65 1.0 17192 86552
chr19 16685718 16739873 - MED26 ENSG00000105085.6 16739873 0.57 0.99 17193 57179
chr19 16688453 16770926 - CTC-429P9.4 ENSG00000268790.1 16770926 0.94 0.95 17194 26126
chr19 16741562 16771253 - SMIM7 ENSG00000214046.4 16771253 0.66 0.99 17195 25799
chr19 16771938 16800840 + TMEM38A ENSG00000072954.2 16771938 0.74 1.0 17196 25114
Expression level of Genes
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miRNAs possibly regulated by vista28839[chr19:16696641-16697052]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results