EnhancerDB
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  3. vista29[chr1:1143531-1144198]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista29[chr1:1143531-1144198]
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Tissue distribution of vista29
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Transcription factor that possibly regulate vista29[chr1:1143531-1144198]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 1143571 1143581 HOXA13 JASPAR yes 118214488
chr1 1143571 1143581 HOXB13 JASPAR yes 118214489
chr1 1143571 1143581 HOXD13 JASPAR yes 118214490
chr1 1143573 1143585 INSM1 JASPAR yes 118214491
chr1 1143578 1143583 SP1 TRANSFAC yes 118214492
chr1 1143578 1143592 PLAG1 JASPAR yes 118214493
chr1 1143591 1143596 SP1 TRANSFAC yes 118214494
chr1 1143595 1143607 INSM1 JASPAR yes 118214495
chr1 1143602 1143606 LFA1 TRANSFAC yes 118214496
chr1 1143613 1143619 SP1 TRANSFAC yes 118214497
chr1 1143613 1143623 SP1 JASPAR yes 118214498
chr1 1143614 1143624 SP1 JASPAR yes 118214499
chr1 1143617 1143627 ZNF740 JASPAR yes 118214500
chr1 1143617 1143631 GLIS2 JASPAR yes 118214501
chr1 1143617 1143632 NR2C2 JASPAR yes 118214502
chr1 1143618 1143628 SP1 JASPAR yes 118214503
chr1 1143618 1143629 E2F4 JASPAR yes 118214504
chr1 1143620 1143629 SP1 TRANSFAC yes 118214505
chr1 1143621 1143627 SP1 TRANSFAC yes 118214506
chr1 1143621 1143631 SP1 JASPAR yes 118214507
chr1 1143622 1143629 SP1 TRANSFAC yes 118214508
chr1 1143622 1143637 ZIC3 JASPAR yes 118214509
chr1 1143622 1143637 ZIC4 JASPAR yes 118214510
chr1 1143623 1143628 SP1 TRANSFAC yes 118214511
chr1 1143623 1143629 SP1 TRANSFAC yes 118214512
chr1 1143633 1143645 NHLH1 JASPAR yes 118214513
chr1 1143634 1143644 NHLH1 JASPAR yes 118214514
chr1 1143639 1143658 REST JASPAR yes 118214515
chr1 1143675 1143687 GLI2 JASPAR yes 118214516
chr1 1143676 1143688 ZBTB7A JASPAR yes 118214517
chr1 1143681 1143685 H4TF2 TRANSFAC yes 118214518
chr1 1143683 1143696 TFAP2A JASPAR yes 118214519
chr1 1143683 1143696 TFAP2B JASPAR yes 118214520
chr1 1143683 1143696 TFAP2C JASPAR yes 118214521
chr1 1143701 1143709 MGA JASPAR yes 118214522
chr1 1143701 1143709 TBX15 JASPAR yes 118214523
chr1 1143701 1143709 TBX1 JASPAR yes 118214524
chr1 1143701 1143709 TBX4 JASPAR yes 118214525
chr1 1143701 1143709 TBX5 JASPAR yes 118214526
chr1 1143706 1143711 ATF1 TRANSFAC yes 118214527
chr1 1143708 1143729 ZNF263 JASPAR yes 118214528
chr1 1143732 1143746 PLAG1 JASPAR yes 118214529
chr1 1143742 1143748 SP1 TRANSFAC yes 118214530
chr1 1143742 1143752 SP1 JASPAR yes 118214531
chr1 1143766 1143770 NFE TRANSFAC yes 118214532
chr1 1143767 1143772 GATA2 JASPAR yes 118214533
chr1 1143831 1143845 XBP1 JASPAR yes 118214534
chr1 1143838 1143842 LFA1 TRANSFAC yes 118214535
chr1 1143902 1143906 LFA1 TRANSFAC yes 118214536
chr1 1143903 1143913 NHLH1 JASPAR yes 118214537
chr1 1143914 1143927 TFAP2A JASPAR yes 118214538
chr1 1143914 1143927 TFAP2B JASPAR yes 118214539
chr1 1143914 1143927 TFAP2C JASPAR yes 118214540
chr1 1143914 1143928 GLIS2 JASPAR yes 118214541
chr1 1143922 1143936 MTF1 JASPAR yes 118214542
chr1 1143923 1143929 MAZ TRANSFAC yes 118214543
chr1 1143936 1143950 TLX1 JASPAR yes 118214544
chr1 1143937 1143941 LFA1 TRANSFAC yes 118214545
chr1 1143937 1143951 TLX1 JASPAR yes 118214546
chr1 1143942 1143957 HNF4G JASPAR yes 118214547
chr1 1143943 1143958 HNF4A JASPAR yes 118214548
chr1 1143975 1143981 YY1 JASPAR yes 118214549
chr1 1143999 1144005 YY1 JASPAR yes 118214550
chr1 1143999 1144012 ATF4 JASPAR yes 118214551
chr1 1144001 1144009 CREB1 JASPAR yes 118214552
chr1 1144014 1144021 SP1 TRANSFAC yes 118214553
chr1 1144014 1144024 SP1 JASPAR yes 118214554
chr1 1144015 1144023 SP1 TRANSFAC yes 118214555
chr1 1144015 1144024 SP1 TRANSFAC yes 118214556
chr1 1144015 1144025 SP1 JASPAR yes 118214557
chr1 1144016 1144021 SP1 TRANSFAC yes 118214558
chr1 1144016 1144027 E2F4 JASPAR yes 118214559
chr1 1144017 1144022 SP1 TRANSFAC yes 118214560
chr1 1144017 1144023 SP1 TRANSFAC yes 118214561
chr1 1144019 1144040 ZNF263 JASPAR yes 118214562
chr1 1144021 1144027 MAZ TRANSFAC yes 118214563
chr1 1144028 1144049 ZNF263 JASPAR yes 118214564
chr1 1144058 1144072 PLAG1 JASPAR yes 118214565
chr1 1144083 1144087 H4TF2 TRANSFAC yes 118214566
chr1 1144091 1144096 TFAP2A TRANSFAC yes 118214567
chr1 1144091 1144097 MZF1 JASPAR yes 118214568
chr1 1144100 1144114 EBF1 JASPAR yes 118214569
chr1 1144107 1144121 PLAG1 JASPAR yes 118214570
chr1 1144108 1144113 SP1 TRANSFAC yes 118214571
chr1 1144109 1144124 TFAP2C JASPAR yes 118214572
chr1 1144110 1144121 TFAP2A JASPAR yes 118214573
chr1 1144110 1144122 TFAP2A JASPAR yes 118214574
chr1 1144111 1144120 TFAP2A JASPAR yes 118214575
chr1 1144126 1144139 TFAP2A JASPAR yes 118214576
chr1 1144126 1144139 TFAP2B JASPAR yes 118214577
chr1 1144126 1144139 TFAP2C JASPAR yes 118214578
chr1 1144126 1144141 TFAP2A JASPAR yes 118214579
chr1 1144126 1144141 TFAP2C JASPAR yes 118214580
chr1 1144140 1144153 ELF1 JASPAR yes 118214581
chr1 1144142 1144153 ETV2 JASPAR yes 118214582
chr1 1144143 1144153 ERF JASPAR yes 118214583
chr1 1144143 1144153 ERG JASPAR yes 118214584
chr1 1144143 1144153 ETS1 JASPAR yes 118214585
chr1 1144143 1144153 FLI1 JASPAR yes 118214586
chr1 1144143 1144153 GABPA JASPAR yes 118214587
chr1 1144143 1144154 ELK4 JASPAR yes 118214588
chr1 1144143 1144154 FLI1 JASPAR yes 118214589
chr1 1144156 1144174 E2F3 JASPAR yes 118214590
chr1 1144159 1144171 E2F1 JASPAR yes 118214591
chr1 1144160 1144171 E2F1 JASPAR yes 118214592
chr1 1144173 1144178 TFAP2A TRANSFAC yes 118214593
chr1 1144173 1144179 MZF1 JASPAR yes 118214594
SNP sites on vista29[chr1:1143531-1144198]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 1143568 rs150465089 G A no 4447
chr1 1143657 rs3753348 C G,T
REST
4448
chr1 1143688 rs184346025 C T
TFAP2A TFAP2B TFAP2C ZBTB7A
4449
chr1 1143711 rs562730171 G A
ATF1 ZNF263
4450
chr1 1143823 rs190498570 G A,C no 4451
chr1 1143894 rs568765661 C T no 4452
chr1 1143922 rs111812582 C T
GLIS2 MTF1 TFAP2A TFAP2B TFAP2C
4453
chr1 1144025 rs375728281 A T
E2F4 MAZ SP1 ZNF263
4454
chr1 1144055 rs138198189 C T no 4455
chr1 1144058 rs3753349 C T
PLAG1
4456
chr1 1144122 rs57356573 T C
TFAP2A TFAP2C
4457
chr1 1144164 rs56852764 G T
E2F1 E2F3
4458
chr1 1144166 rs369192196 G A,C
E2F1 E2F3
4459
chr1 1144196 rs3753350 T C no 4460
Genes possibly regulated by vista29[chr1:1143531-1144198]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 1017198 1051741 - C1orf159 ENSG00000131591.13 1051741 0.65 1.0 15 8210
chr1 1109264 1133315 + TTLL10 ENSG00000162571.9 1109264 0.93 1.0 16 65733
chr1 1138888 1142071 - TNFRSF18 ENSG00000186891.9 1142071 0.88 1.0 17 98540
chr1 1146706 1149518 - TNFRSF4 ENSG00000186827.6 1149518 0.86 1.0 18 94680
chr1 1152288 1167411 - SDF4 ENSG00000078808.12 1167411 0.56 1.0 19 76787
chr1 1167629 1170421 + B3GALT6 ENSG00000176022.3 1167629 0.6 0.99 20 76569
chr1 1177826 1182102 - FAM132A ENSG00000184163.3 1182102 0.9 0.99 21 62096
chr1 1189289 1209265 - UBE2J2 ENSG00000160087.16 1209265 0.6 0.99 22 34933
chr1 1215816 1227409 + SCNN1D ENSG00000162572.15 1215816 0.8 1.0 23 28382
chr1 1243947 1247057 + PUSL1 ENSG00000169972.7 1243947 0.52 1.0 25 251
Expression level of Genes
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miRNAs possibly regulated by vista29[chr1:1143531-1144198]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results