EnhancerDB
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  3. vista29467[chr19:42618693-42618808]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista29467[chr19:42618693-42618808]
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Tissue distribution of vista29467
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Transcription factor that possibly regulate vista29467[chr19:42618693-42618808]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 42618681 42618909 RUNX3 UCSC Txn Factor no Conserved 108411951
chr19 42618706 42618720 ZIC1 JASPAR yes 70850700
chr19 42618706 42618720 ZIC1 JASPAR yes 113404667
chr19 42618706 42618721 ZIC3 JASPAR yes 70850701
chr19 42618706 42618721 ZIC4 JASPAR yes 70850702
chr19 42618706 42618721 ZIC3 JASPAR yes 113404668
chr19 42618706 42618721 ZIC4 JASPAR yes 113404669
chr19 42618707 42618717 FIGLA JASPAR yes 70850703
chr19 42618707 42618717 ID4 JASPAR yes 70850704
chr19 42618707 42618717 MSC JASPAR yes 70850705
chr19 42618707 42618717 MYF6 JASPAR yes 70850706
chr19 42618707 42618717 TCF3 JASPAR yes 70850707
chr19 42618707 42618717 TCF4 JASPAR yes 70850708
chr19 42618707 42618717 FIGLA JASPAR yes 113404670
chr19 42618707 42618717 ID4 JASPAR yes 113404671
chr19 42618707 42618717 MSC JASPAR yes 113404672
chr19 42618707 42618717 MYF6 JASPAR yes 113404673
chr19 42618707 42618717 TCF3 JASPAR yes 113404674
chr19 42618707 42618717 TCF4 JASPAR yes 113404675
chr19 42618708 42618717 SNAI2 JASPAR yes 70850709
chr19 42618708 42618717 SNAI2 JASPAR yes 113404676
chr19 42618709 42618714 USF2 TRANSFAC yes 70850710
chr19 42618709 42618714 USF2 TRANSFAC yes 113404677
chr19 42618727 42618742 RFX5 JASPAR yes 70850711
chr19 42618727 42618742 RFX5 JASPAR yes 113404678
chr19 42618737 42618748 E2F6 JASPAR yes 70850712
chr19 42618737 42618748 E2F6 JASPAR yes 113404679
chr19 42618738 42618743 SP1 TRANSFAC yes 70850713
chr19 42618738 42618743 SP1 TRANSFAC yes 113404680
chr19 42618739 42618749 SP1 JASPAR yes 70850714
chr19 42618739 42618749 ZNF740 JASPAR yes 70850715
chr19 42618739 42618749 SP1 JASPAR yes 113404681
chr19 42618739 42618749 ZNF740 JASPAR yes 113404682
chr19 42618741 42618747 MAZ TRANSFAC yes 70850716
chr19 42618741 42618747 MAZ TRANSFAC yes 113404683
chr19 42618783 42618795 NHLH1 JASPAR yes 70850717
chr19 42618783 42618795 NHLH1 JASPAR yes 113404684
chr19 42618793 42618808 RUNX2 JASPAR yes 70850718
chr19 42618793 42618808 RUNX2 JASPAR yes 113404685
chr19 42618794 42618805 USF1 JASPAR yes 70850719
chr19 42618794 42618805 USF1 JASPAR yes 113404686
chr19 42618795 42618805 TFE3 JASPAR yes 70850720
chr19 42618795 42618805 TFEB JASPAR yes 70850721
chr19 42618795 42618805 TFEC JASPAR yes 70850722
chr19 42618795 42618805 TFE3 JASPAR yes 113404687
chr19 42618795 42618805 TFEB JASPAR yes 113404688
chr19 42618795 42618805 TFEC JASPAR yes 113404689
chr19 42618795 42618806 USF2 JASPAR yes 70850723
chr19 42618795 42618806 USF2 JASPAR yes 113404690
chr19 42618796 42618806 MAX JASPAR yes 70850724
chr19 42618796 42618806 MAX JASPAR yes 113404691
chr19 42618796 42618807 RUNX1 JASPAR yes 70850725
chr19 42618796 42618807 RUNX1 JASPAR yes 113404692
SNP sites on vista29467[chr19:42618693-42618808]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
Genes possibly regulated by vista29467[chr19:42618693-42618808]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 42502473 42573650 - GRIK5 ENSG00000105737.5 42573650 0.85 1.0 17596 54957
chr19 42572629 42585701 + ZNF574 ENSG00000105732.9 42572629 0.64 1.0 17597 53936
chr19 42590263 42700737 - POU2F2 ENSG00000028277.16 42700737 0.92 0.99 17598 18071
Expression level of Genes
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miRNAs possibly regulated by vista29467[chr19:42618693-42618808]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results