EnhancerDB
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  3. vista2956[chr1:112048437-112048734]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista2956[chr1:112048437-112048734]
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Tissue distribution of vista2956
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Transcription factor that possibly regulate vista2956[chr1:112048437-112048734]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 112048475 112048755 SPI1 UCSC Txn Factor no Conserved 107822153
chr1 112048442 112048446 YY1 TRANSFAC yes 31523872
chr1 112048442 112048446 YY1 TRANSFAC yes 118351971
chr1 112048474 112048486 PROX1 JASPAR yes 31523873
chr1 112048474 112048486 PROX1 JASPAR yes 118351972
chr1 112048531 112048539 MEIS3 JASPAR yes 31523874
chr1 112048531 112048539 MEIS3 JASPAR yes 118351973
chr1 112048532 112048536 NFE TRANSFAC yes 31523875
chr1 112048532 112048536 NFE TRANSFAC yes 118351974
chr1 112048533 112048544 USF1 JASPAR yes 31523876
chr1 112048533 112048544 USF2 JASPAR yes 31523877
chr1 112048533 112048544 USF1 JASPAR yes 118351975
chr1 112048533 112048544 USF2 JASPAR yes 118351976
chr1 112048534 112048541 USF2 TRANSFAC yes 31523878
chr1 112048534 112048541 USF2 TRANSFAC yes 118351977
chr1 112048536 112048541 USF2 TRANSFAC yes 31523879
chr1 112048536 112048541 USF2 TRANSFAC yes 118351978
chr1 112048539 112048551 HINFP JASPAR yes 31523880
chr1 112048539 112048551 HINFP JASPAR yes 118351979
chr1 112048542 112048546 H4TF2 TRANSFAC yes 31523881
chr1 112048542 112048546 H4TF2 TRANSFAC yes 118351980
chr1 112048552 112048568 NFYA JASPAR yes 31523882
chr1 112048552 112048568 NFYA JASPAR yes 118351981
chr1 112048591 112048612 IRF1 JASPAR yes 31523883
chr1 112048591 112048612 IRF1 JASPAR yes 118351982
chr1 112048595 112048616 ZNF263 JASPAR yes 31523884
chr1 112048595 112048616 ZNF263 JASPAR yes 118351983
chr1 112048597 112048618 IRF1 JASPAR yes 31523885
chr1 112048597 112048618 IRF1 JASPAR yes 118351984
chr1 112048598 112048619 ZNF263 JASPAR yes 31523886
chr1 112048598 112048619 ZNF263 JASPAR yes 118351985
chr1 112048599 112048614 PRDM1 JASPAR yes 31523887
chr1 112048599 112048614 STAT2 JASPAR yes 31523888
chr1 112048599 112048614 PRDM1 JASPAR yes 118351986
chr1 112048599 112048614 STAT2 JASPAR yes 118351987
chr1 112048600 112048614 STAT1 JASPAR yes 31523889
chr1 112048600 112048614 STAT1 JASPAR yes 118351988
chr1 112048600 112048621 ZNF263 JASPAR yes 31523890
chr1 112048600 112048621 ZNF263 JASPAR yes 118351989
chr1 112048601 112048613 IRF1 JASPAR yes 31523891
chr1 112048601 112048613 IRF1 JASPAR yes 118351990
chr1 112048605 112048616 ELK4 JASPAR yes 31523892
chr1 112048605 112048616 FLI1 JASPAR yes 31523893
chr1 112048605 112048616 ELK4 JASPAR yes 118351991
chr1 112048605 112048616 FLI1 JASPAR yes 118351992
chr1 112048606 112048616 ETV6 JASPAR yes 31523894
chr1 112048606 112048616 GABPA JASPAR yes 31523895
chr1 112048606 112048616 ETV6 JASPAR yes 118351993
chr1 112048606 112048616 GABPA JASPAR yes 118351994
chr1 112048606 112048619 ELF1 JASPAR yes 31523896
chr1 112048606 112048619 ELF1 JASPAR yes 118351995
chr1 112048607 112048614 SPI1 JASPAR yes 31523897
chr1 112048607 112048614 SPI1 JASPAR yes 118351996
chr1 112048607 112048615 EHF JASPAR yes 31523898
chr1 112048607 112048615 EHF JASPAR yes 118351997
chr1 112048609 112048616 SPIB JASPAR yes 31523899
chr1 112048609 112048616 SPIB JASPAR yes 118351998
chr1 112048632 112048638 SOX10 JASPAR yes 31523900
chr1 112048632 112048638 SOX10 JASPAR yes 118351999
chr1 112048651 112048672 ZNF263 JASPAR yes 31523901
chr1 112048651 112048672 ZNF263 JASPAR yes 118352000
chr1 112048653 112048665 E2F8 JASPAR yes 31523902
chr1 112048653 112048665 E2F8 JASPAR yes 118352001
chr1 112048669 112048684 FOXP1 JASPAR yes 31523903
chr1 112048669 112048684 FOXP1 JASPAR yes 118352002
chr1 112048672 112048683 FOXP2 JASPAR yes 31523904
chr1 112048672 112048683 FOXP2 JASPAR yes 118352003
chr1 112048674 112048683 SRY JASPAR yes 31523905
chr1 112048674 112048683 SRY JASPAR yes 118352004
chr1 112048676 112048688 FOXI1 JASPAR yes 31523906
chr1 112048676 112048688 FOXI1 JASPAR yes 118352005
chr1 112048708 112048729 REST JASPAR yes 31523907
chr1 112048708 112048729 REST JASPAR yes 118352006
chr1 112048709 112048728 REST JASPAR yes 31523908
chr1 112048709 112048728 REST JASPAR yes 118352007
SNP sites on vista2956[chr1:112048437-112048734]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 112048467 rs3216055 GA G no 559124
chr1 112048475 rs573181444 C T
PROX1 SPI1
559125
chr1 112048570 rs2786996 C T
SPI1
559126
chr1 112048585 rs138974474 G A
SPI1
559127
chr1 112048612 rs114084180 C T
EHF ELF1 ELK4 ETV6 FLI1 GABPA IRF1 PRDM1 SPI1 SPIB STAT1 STAT2 ZNF263
559128
chr1 112048701 rs184264296 T C
SPI1
559129
chr1 112048703 rs67610358 TTA T
SPI1
559130
Genes possibly regulated by vista2956[chr1:112048437-112048734]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 111956936 111970399 - OVGP1 ENSG00000085465.11 111970399 0.95 1.0 1013 21962
chr1 111982512 111991998 - WDR77 ENSG00000116455.9 111991998 0.82 0.98 1014 43561
chr1 111991486 112005395 + ATP5F1 ENSG00000116459.6 111991486 0.83 0.99 1015 43049
chr1 112016414 112021134 + C1orf162 ENSG00000143110.7 112016414 0.89 1.0 1016 67977
chr1 112025970 112106584 - ADORA3 ENSG00000121933.13 112106584 0.72 0.99 1017 42150
chr1 112084840 112259313 + RAP1A ENSG00000116473.10 112084840 0.71 0.99 1018 63894
Expression level of Genes
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miRNAs possibly regulated by vista2956[chr1:112048437-112048734]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results