EnhancerDB
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  3. vista29880[chr19:52239330-52239749]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista29880[chr19:52239330-52239749]
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Tissue distribution of vista29880
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Transcription factor that possibly regulate vista29880[chr19:52239330-52239749]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 52239344 52239358 TLX1 JASPAR yes 70873252
chr19 52239344 52239358 TLX1 JASPAR yes 113785480
chr19 52239350 52239363 SMAD2 JASPAR yes 70873253
chr19 52239350 52239363 SMAD2 JASPAR yes 113785481
chr19 52239365 52239380 AR JASPAR yes 70873254
chr19 52239365 52239380 AR JASPAR yes 113785482
chr19 52239378 52239395 RARA JASPAR yes 70873255
chr19 52239378 52239395 RARA JASPAR yes 113785483
chr19 52239379 52239393 TCF7L2 JASPAR yes 70873256
chr19 52239379 52239393 TCF7L2 JASPAR yes 113785484
chr19 52239379 52239394 LEF1 JASPAR yes 70873257
chr19 52239379 52239394 LEF1 JASPAR yes 113785485
chr19 52239390 52239394 LFA1 TRANSFAC yes 70873258
chr19 52239390 52239394 LFA1 TRANSFAC yes 113785486
chr19 52239409 52239415 GATA3 JASPAR yes 70873259
chr19 52239409 52239415 GATA3 JASPAR yes 113785487
chr19 52239442 52239459 RARA JASPAR yes 70873260
chr19 52239442 52239459 RARA JASPAR yes 113785488
chr19 52239451 52239462 ESRRA JASPAR yes 70873261
chr19 52239451 52239462 ESRRA JASPAR yes 113785489
chr19 52239469 52239485 ZNF143 JASPAR yes 70873262
chr19 52239469 52239485 ZNF143 JASPAR yes 113785490
chr19 52239489 52239504 RUNX2 JASPAR yes 70873263
chr19 52239489 52239504 RUNX2 JASPAR yes 113785491
chr19 52239490 52239499 RUNX2 JASPAR yes 70873264
chr19 52239490 52239499 RUNX2 JASPAR yes 113785492
chr19 52239490 52239500 RUNX3 JASPAR yes 70873265
chr19 52239490 52239500 RUNX3 JASPAR yes 113785493
chr19 52239490 52239501 RUNX1 JASPAR yes 70873266
chr19 52239490 52239501 RUNX1 JASPAR yes 113785494
chr19 52239490 52239506 ZNF143 JASPAR yes 70873267
chr19 52239490 52239506 ZNF143 JASPAR yes 113785495
chr19 52239496 52239510 ATF7 JASPAR yes 70873268
chr19 52239496 52239510 BATF3 JASPAR yes 70873269
chr19 52239496 52239510 ATF7 JASPAR yes 113785496
chr19 52239496 52239510 BATF3 JASPAR yes 113785497
chr19 52239497 52239509 JDP2 JASPAR yes 70873270
chr19 52239497 52239509 JDP2 JASPAR yes 113785498
chr19 52239527 52239541 SPIC JASPAR yes 70873271
chr19 52239527 52239541 SPIC JASPAR yes 113785499
chr19 52239530 52239541 ELF5 JASPAR yes 70873272
chr19 52239530 52239541 ETV2 JASPAR yes 70873273
chr19 52239530 52239541 ELF5 JASPAR yes 113785500
chr19 52239530 52239541 ETV2 JASPAR yes 113785501
chr19 52239531 52239538 SPIB JASPAR yes 70873274
chr19 52239531 52239538 SPIB JASPAR yes 113785502
chr19 52239532 52239540 FEV JASPAR yes 70873275
chr19 52239532 52239540 FEV JASPAR yes 113785503
chr19 52239539 52239542 MYB TRANSFAC yes 70873276
chr19 52239539 52239542 MYB TRANSFAC yes 113785504
chr19 52239554 52239565 EBF1 JASPAR yes 70873277
chr19 52239554 52239565 EBF1 JASPAR yes 113785505
chr19 52239555 52239566 EBF1 JASPAR yes 70873278
chr19 52239555 52239566 EBF1 JASPAR yes 113785506
chr19 52239555 52239568 TFAP2A JASPAR yes 70873279
chr19 52239555 52239568 TFAP2A JASPAR yes 113785507
chr19 52239568 52239575 NKX3-1 JASPAR yes 70873280
chr19 52239568 52239575 NKX3-1 JASPAR yes 113785508
chr19 52239576 52239583 PEA3 TRANSFAC yes 70873281
chr19 52239576 52239583 PEA3 TRANSFAC yes 113785509
chr19 52239586 52239589 MYB TRANSFAC yes 70873282
chr19 52239586 52239589 MYB TRANSFAC yes 113785510
chr19 52239606 52239624 SRF JASPAR yes 70873283
chr19 52239606 52239624 SRF JASPAR yes 113785511
chr19 52239608 52239624 SRF JASPAR yes 70873284
chr19 52239608 52239624 SRF JASPAR yes 113785512
chr19 52239608 52239626 SRF JASPAR yes 70873285
chr19 52239608 52239626 SRF JASPAR yes 113785513
chr19 52239609 52239621 SRF JASPAR yes 70873286
chr19 52239609 52239621 SRF JASPAR yes 113785514
chr19 52239611 52239623 SRF JASPAR yes 70873287
chr19 52239611 52239623 SRF JASPAR yes 113785515
chr19 52239614 52239618 YY1 TRANSFAC yes 70873288
chr19 52239614 52239618 YY1 TRANSFAC yes 113785516
chr19 52239629 52239642 POU3F3 JASPAR yes 70873289
chr19 52239629 52239642 POU3F3 JASPAR yes 113785517
chr19 52239638 52239649 CDX2 JASPAR yes 70873290
chr19 52239638 52239649 CDX2 JASPAR yes 113785518
chr19 52239639 52239650 HOXA10 JASPAR yes 70873291
chr19 52239639 52239650 HOXC11 JASPAR yes 70873292
chr19 52239639 52239650 HOXC12 JASPAR yes 70873293
chr19 52239639 52239650 HOXC13 JASPAR yes 70873294
chr19 52239639 52239650 HOXD12 JASPAR yes 70873295
chr19 52239639 52239650 HOXA10 JASPAR yes 113785519
chr19 52239639 52239650 HOXC11 JASPAR yes 113785520
chr19 52239639 52239650 HOXC12 JASPAR yes 113785521
chr19 52239639 52239650 HOXC13 JASPAR yes 113785522
chr19 52239639 52239650 HOXD12 JASPAR yes 113785523
chr19 52239640 52239649 CDX1 JASPAR yes 70873296
chr19 52239640 52239649 CDX1 JASPAR yes 113785524
chr19 52239640 52239650 HOXC10 JASPAR yes 70873297
chr19 52239640 52239650 HOXD11 JASPAR yes 70873298
chr19 52239640 52239650 HOXD13 JASPAR yes 70873299
chr19 52239640 52239650 HOXC10 JASPAR yes 113785525
chr19 52239640 52239650 HOXD11 JASPAR yes 113785526
chr19 52239640 52239650 HOXD13 JASPAR yes 113785527
chr19 52239663 52239672 POU3F4 JASPAR yes 70873300
chr19 52239663 52239672 POU3F4 JASPAR yes 113785528
chr19 52239670 52239675 GATA2 JASPAR yes 70873301
chr19 52239670 52239675 GATA2 JASPAR yes 113785529
chr19 52239699 52239714 ZIC4 JASPAR yes 70873302
chr19 52239699 52239714 ZIC4 JASPAR yes 113785530
chr19 52239700 52239714 ZIC1 JASPAR yes 70873303
chr19 52239700 52239714 ZIC1 JASPAR yes 113785531
chr19 52239702 52239714 PKNOX1 JASPAR yes 70873304
chr19 52239702 52239714 PKNOX1 JASPAR yes 113785532
chr19 52239703 52239712 SNAI2 JASPAR yes 70873305
chr19 52239703 52239712 SNAI2 JASPAR yes 113785533
chr19 52239703 52239713 HEY2 JASPAR yes 70873306
chr19 52239703 52239713 ID4 JASPAR yes 70873307
chr19 52239703 52239713 TCF3 JASPAR yes 70873308
chr19 52239703 52239713 TCF4 JASPAR yes 70873309
chr19 52239703 52239713 HEY2 JASPAR yes 113785534
chr19 52239703 52239713 ID4 JASPAR yes 113785535
chr19 52239703 52239713 TCF3 JASPAR yes 113785536
chr19 52239703 52239713 TCF4 JASPAR yes 113785537
chr19 52239709 52239725 SRF JASPAR yes 70873310
chr19 52239709 52239725 SRF JASPAR yes 113785538
chr19 52239709 52239727 SRF JASPAR yes 70873311
chr19 52239709 52239727 SRF JASPAR yes 113785539
chr19 52239710 52239722 SRF JASPAR yes 70873312
chr19 52239710 52239722 SRF JASPAR yes 113785540
chr19 52239715 52239719 TEAD2 TRANSFAC yes 70873313
chr19 52239715 52239719 TEAD2 TRANSFAC yes 113785541
chr19 52239720 52239741 ZNF263 JASPAR yes 70873314
chr19 52239720 52239741 ZNF263 JASPAR yes 113785542
chr19 52239732 52239745 SMAD2 JASPAR yes 70873315
chr19 52239732 52239745 SMAD2 JASPAR yes 113785543
chr19 52239739 52239754 FOXP1 JASPAR yes 70873316
chr19 52239739 52239754 FOXP1 JASPAR yes 113785544
chr19 52239746 52239752 HiNF-A TRANSFAC yes 70873317
chr19 52239746 52239752 HiNF-A TRANSFAC yes 113785545
SNP sites on vista29880[chr19:52239330-52239749]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
Genes possibly regulated by vista29880[chr19:52239330-52239749]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 52114781 52150151 - SIGLEC5 ENSG00000105501.7 52150151 0.97 0.96 17930 10821
chr19 52115344 52150142 - SIGLEC5 ENSG00000268500.1 52150142 0.97 1.0 17931 10812
chr19 52145806 52150054 - SIGLEC14 ENSG00000254415.3 52150054 0.97 0.96 17932 10724
chr19 52216365 52227247 - HAS1 ENSG00000105509.6 52227247 0.99 0.99 17933 87917
chr19 52248425 52307363 - FPR1 ENSG00000171051.4 52307363 0.97 0.99 17934 32386
chr19 52255279 52273779 + FPR2 ENSG00000171049.8 52255279 0.96 1.0 17935 84470
chr19 52298416 52329442 + FPR3 ENSG00000187474.4 52298416 0.88 0.95 17936 41333
Expression level of Genes
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miRNAs possibly regulated by vista29880[chr19:52239330-52239749]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results