EnhancerDB
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  3. vista3042[chr1:116253956-116254148]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3042[chr1:116253956-116254148]
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Tissue distribution of vista3042
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Transcription factor that possibly regulate vista3042[chr1:116253956-116254148]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 116253724 116254348 TCF7L2 UCSC Txn Factor no Conserved 107823778
chr1 116253921 116254125 CEBPB UCSC Txn Factor no Conserved 107823793
chr1 116253956 116254196 FOXA1 UCSC Txn Factor no Conserved 107823794
chr1 116253967 116254185 FOXA2 UCSC Txn Factor no Conserved 107823796
chr1 116253973 116254209 MYC UCSC Txn Factor no Conserved 107823798
chr1 116253989 116254114 USF1 UCSC Txn Factor no Conserved 107823801
chr1 116253966 116253970 LFA1 TRANSFAC yes 31753715
chr1 116253966 116253970 LFA1 TRANSFAC yes 118355886
chr1 116254000 116254011 CEBPB JASPAR yes 31753716
chr1 116254000 116254011 CEBPB JASPAR yes 118355887
chr1 116254007 116254010 MYB TRANSFAC yes 31753717
chr1 116254007 116254010 MYB TRANSFAC yes 118355888
chr1 116254011 116254032 ZNF263 JASPAR yes 31753718
chr1 116254011 116254032 ZNF263 JASPAR yes 118355889
chr1 116254014 116254029 LEF1 JASPAR yes 31753719
chr1 116254014 116254029 NR2C2 JASPAR yes 31753720
chr1 116254014 116254029 LEF1 JASPAR yes 118355890
chr1 116254014 116254029 NR2C2 JASPAR yes 118355891
chr1 116254014 116254035 ZNF263 JASPAR yes 31753721
chr1 116254014 116254035 ZNF263 JASPAR yes 118355892
chr1 116254015 116254029 TCF7L2 JASPAR yes 31753722
chr1 116254015 116254029 TCF7L2 JASPAR yes 118355893
chr1 116254015 116254030 PRDM1 JASPAR yes 31753723
chr1 116254015 116254030 PRDM1 JASPAR yes 118355894
chr1 116254046 116254059 ZBTB18 JASPAR yes 31753724
chr1 116254046 116254059 ZBTB18 JASPAR yes 118355895
chr1 116254047 116254057 MSC JASPAR yes 31753725
chr1 116254047 116254057 MYF6 JASPAR yes 31753726
chr1 116254047 116254057 NHLH1 JASPAR yes 31753727
chr1 116254047 116254057 TFAP4 JASPAR yes 31753728
chr1 116254047 116254057 MSC JASPAR yes 118355896
chr1 116254047 116254057 MYF6 JASPAR yes 118355897
chr1 116254047 116254057 NHLH1 JASPAR yes 118355898
chr1 116254047 116254057 TFAP4 JASPAR yes 118355899
chr1 116254053 116254064 USF2 JASPAR yes 31753729
chr1 116254053 116254064 USF2 JASPAR yes 118355900
chr1 116254054 116254064 TFE3 JASPAR yes 31753730
chr1 116254054 116254064 TFEB JASPAR yes 31753731
chr1 116254054 116254064 TFEC JASPAR yes 31753732
chr1 116254054 116254064 TFE3 JASPAR yes 118355901
chr1 116254054 116254064 TFEB JASPAR yes 118355902
chr1 116254054 116254064 TFEC JASPAR yes 118355903
chr1 116254054 116254065 USF1 JASPAR yes 31753733
chr1 116254054 116254065 USF1 JASPAR yes 118355904
chr1 116254058 116254070 PROX1 JASPAR yes 31753734
chr1 116254058 116254070 PROX1 JASPAR yes 118355905
chr1 116254072 116254084 FOXC2 JASPAR yes 31753735
chr1 116254072 116254084 FOXC2 JASPAR yes 118355906
chr1 116254073 116254084 FOXB1 JASPAR yes 31753736
chr1 116254073 116254084 FOXC1 JASPAR yes 31753737
chr1 116254073 116254084 FOXB1 JASPAR yes 118355907
chr1 116254073 116254084 FOXC1 JASPAR yes 118355908
chr1 116254080 116254084 TEAD2 TRANSFAC yes 31753738
chr1 116254080 116254084 TEAD2 TRANSFAC yes 118355909
chr1 116254082 116254085 MYB TRANSFAC yes 31753739
chr1 116254082 116254085 MYB TRANSFAC yes 118355910
chr1 116254092 116254096 NFE TRANSFAC yes 31753740
chr1 116254092 116254096 NFE TRANSFAC yes 118355911
chr1 116254109 116254113 LFA1 TRANSFAC yes 31753741
chr1 116254109 116254113 LFA1 TRANSFAC yes 118355912
chr1 116254126 116254136 MAX JASPAR yes 31753742
chr1 116254126 116254136 MAX JASPAR yes 118355913
chr1 116254140 116254144 H4TF2 TRANSFAC yes 31753743
chr1 116254140 116254144 H4TF2 TRANSFAC yes 118355914
chr1 116254143 116254154 HOXC13 JASPAR yes 31753744
chr1 116254143 116254154 HOXC13 JASPAR yes 118355915
SNP sites on vista3042[chr1:116253956-116254148]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 116253985 rs563152448 T G
CEBPB FOXA1 FOXA2 MYC TCF7L2
582505
chr1 116254062 rs75639148 G A
CEBPB FOXA1 FOXA2 MYC PROX1 TCF7L2 TFE3 TFEB TFEC USF1 USF2
582506
Genes possibly regulated by vista3042[chr1:116253956-116254148]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 116184574 116240845 + VANGL1 ENSG00000173218.10 116184574 0.8 0.99 1054 30618
chr1 116242628 116311402 - CASQ2 ENSG00000118729.10 116311402 0.98 0.99 1055 42746
Expression level of Genes
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miRNAs possibly regulated by vista3042[chr1:116253956-116254148]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results