EnhancerDB
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  3. vista306[chr1:9687482-9687636]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista306[chr1:9687482-9687636]
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Tissue distribution of vista306
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Transcription factor that possibly regulate vista306[chr1:9687482-9687636]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 9687501 9687512 NRF1 JASPAR yes 26665189
chr1 9687501 9687512 NRF1 JASPAR yes 118227636
chr1 9687502 9687514 NHLH1 JASPAR yes 26665190
chr1 9687502 9687514 NHLH1 JASPAR yes 118227637
chr1 9687503 9687513 NHLH1 JASPAR yes 26665191
chr1 9687503 9687513 NHLH1 JASPAR yes 118227638
chr1 9687550 9687561 E2F4 JASPAR yes 26665192
chr1 9687550 9687561 E2F4 JASPAR yes 118227639
chr1 9687551 9687562 E2F1 JASPAR yes 26665193
chr1 9687551 9687562 E2F1 JASPAR yes 118227640
chr1 9687589 9687595 SP1 TRANSFAC yes 26665194
chr1 9687589 9687595 SP1 TRANSFAC yes 118227641
chr1 9687590 9687595 SP1 TRANSFAC yes 26665195
chr1 9687590 9687595 SP1 TRANSFAC yes 118227642
chr1 9687600 9687610 GSC2 JASPAR yes 26665196
chr1 9687600 9687610 GSC2 JASPAR yes 118227643
chr1 9687601 9687609 OTX1 JASPAR yes 26665197
chr1 9687601 9687609 OTX2 JASPAR yes 26665198
chr1 9687601 9687609 OTX1 JASPAR yes 118227644
chr1 9687601 9687609 OTX2 JASPAR yes 118227645
chr1 9687601 9687614 DUXA JASPAR yes 26665199
chr1 9687601 9687614 DUXA JASPAR yes 118227646
chr1 9687605 9687619 RORA JASPAR yes 26665200
chr1 9687605 9687619 RORA JASPAR yes 118227647
SNP sites on vista306[chr1:9687482-9687636]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 9687596 rs578186604 GCT G no 67086
Genes possibly regulated by vista306[chr1:9687482-9687636]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 9599541 9645237 + SLC25A33 ENSG00000171612.6 9599541 0.75 0.99 124 12059
chr1 9648932 9674935 + TMEM201 ENSG00000188807.8 9648932 0.77 1.0 125 61450
chr1 9711790 9789172 + PIK3CD ENSG00000171608.11 9711790 0.85 1.0 126 75846
chr1 9712668 9714644 - C1orf200 ENSG00000179840.5 9714644 0.96 1.0 127 72992
Expression level of Genes
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miRNAs possibly regulated by vista306[chr1:9687482-9687636]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr11 121970477 121970498 - hsa-miR-125b-1-3p MIMAT0004592 121971155 0.0017695479289246254 0.596522 0.741471 277
Expression level of miRNAs
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