EnhancerDB
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  3. vista30880[chr2:29539991-29540259]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista30880[chr2:29539991-29540259]
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Tissue distribution of vista30880
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Transcription factor that possibly regulate vista30880[chr2:29539991-29540259]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr2 29539789 29540226 CTCF UCSC Txn Factor no Conserved 108431672
chr2 29539870 29540299 NFIC UCSC Txn Factor no Conserved 108431673
chr2 29539880 29540306 RUNX3 UCSC Txn Factor no Conserved 108431674
chr2 29539904 29540358 EP300 UCSC Txn Factor no Conserved 108431675
chr2 29539923 29540182 SPI1 UCSC Txn Factor no Conserved 108431676
chr2 29539982 29540264 STAT3 UCSC Txn Factor no Conserved 108431677
chr2 29539989 29540008 CTCF JASPAR yes 22027338
chr2 29539989 29540008 CTCF JASPAR yes 72699094
chr2 29539990 29539994 NFE TRANSFAC yes 22027339
chr2 29539990 29539994 NFE TRANSFAC yes 72699095
chr2 29540001 29540016 RUNX2 JASPAR yes 22027340
chr2 29540001 29540016 RUNX2 JASPAR yes 72699096
chr2 29540025 29540030 H4TF1 TRANSFAC yes 22027341
chr2 29540025 29540030 H4TF1 TRANSFAC yes 72699097
chr2 29540040 29540054 SPI1 JASPAR yes 22027342
chr2 29540040 29540054 SPI1 JASPAR yes 72699098
chr2 29540042 29540063 IRF1 JASPAR yes 22027343
chr2 29540042 29540063 IRF1 JASPAR yes 72699099
chr2 29540046 29540060 STAT1 JASPAR yes 22027344
chr2 29540046 29540060 STAT1 JASPAR yes 72699100
chr2 29540059 29540063 ESR1 TRANSFAC yes 22027345
chr2 29540059 29540063 ESR1 TRANSFAC yes 72699101
chr2 29540063 29540074 CEBPB JASPAR yes 22027346
chr2 29540063 29540074 CEBPB JASPAR yes 72699102
chr2 29540064 29540075 CEBPA JASPAR yes 22027347
chr2 29540064 29540075 CEBPA JASPAR yes 72699103
chr2 29540083 29540090 MEIS1 JASPAR yes 22027348
chr2 29540083 29540090 MEIS1 JASPAR yes 72699104
chr2 29540083 29540091 MEIS2 JASPAR yes 22027349
chr2 29540083 29540091 MEIS3 JASPAR yes 22027350
chr2 29540083 29540091 MEIS2 JASPAR yes 72699105
chr2 29540083 29540091 MEIS3 JASPAR yes 72699106
chr2 29540083 29540094 STAT1 JASPAR yes 22027351
chr2 29540083 29540094 STAT1 JASPAR yes 72699107
chr2 29540085 29540096 ETV2 JASPAR yes 22027352
chr2 29540085 29540096 ETV2 JASPAR yes 72699108
chr2 29540086 29540096 ETS1 JASPAR yes 22027353
chr2 29540086 29540096 ETS1 JASPAR yes 72699109
chr2 29540086 29540097 FLI1 JASPAR yes 22027354
chr2 29540086 29540097 FLI1 JASPAR yes 72699110
chr2 29540123 29540137 IRF8 JASPAR yes 22027355
chr2 29540123 29540137 IRF8 JASPAR yes 72699111
chr2 29540129 29540142 SMAD2 JASPAR yes 22027356
chr2 29540129 29540142 SMAD2 JASPAR yes 72699112
chr2 29540180 29540192 IRF1 JASPAR yes 22027357
chr2 29540180 29540192 IRF1 JASPAR yes 72699113
chr2 29540224 29540235 GCM1 JASPAR yes 22027358
chr2 29540224 29540235 GCM1 JASPAR yes 72699114
chr2 29540226 29540235 SNAI2 JASPAR yes 22027359
chr2 29540226 29540235 SNAI2 JASPAR yes 72699115
chr2 29540226 29540236 ID4 JASPAR yes 22027360
chr2 29540226 29540236 TCF3 JASPAR yes 22027361
chr2 29540226 29540236 TCF4 JASPAR yes 22027362
chr2 29540226 29540236 ID4 JASPAR yes 72699116
chr2 29540226 29540236 TCF3 JASPAR yes 72699117
chr2 29540226 29540236 TCF4 JASPAR yes 72699118
chr2 29540246 29540252 SOX10 JASPAR yes 22027363
SNP sites on vista30880[chr2:29539991-29540259]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr2 29539995 rs192471329 C T
CTCF EP300 NFIC RUNX3 SPI1 STAT3
5613994
chr2 29540106 rs138912702 G A
CTCF EP300 NFIC RUNX3 SPI1 STAT3
5613995
chr2 29540148 rs60332652 T A
CTCF EP300 NFIC RUNX3 SPI1 STAT3
5613996
chr2 29540215 rs572594067 G A,T
CTCF EP300 NFIC RUNX3 STAT3
5613997
Genes possibly regulated by vista30880[chr2:29539991-29540259]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
Expression level of Genes
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No results
miRNAs possibly regulated by vista30880[chr2:29539991-29540259]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results