EnhancerDB
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  3. vista3250[chr1:150135231-150135764]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3250[chr1:150135231-150135764]
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Tissue distribution of vista3250
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Transcription factor that possibly regulate vista3250[chr1:150135231-150135764]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 150131308 150136452 POLR2A UCSC Txn Factor no Conserved 107827838
chr1 150131308 150136452 POLR2A UCSC Txn Factor no Conserved 107827839
chr1 150135093 150135409 EBF1 UCSC Txn Factor no Conserved 107827859
chr1 150135423 150135675 SRF UCSC Txn Factor no Conserved 107827949
chr1 150135530 150135744 RUNX3 UCSC Txn Factor no Conserved 107827977
chr1 150135251 150135266 RFX5 JASPAR yes 32134374
chr1 150135251 150135266 RFX5 JASPAR yes 118366388
chr1 150135252 150135256 NFE TRANSFAC yes 32134375
chr1 150135252 150135256 NFE TRANSFAC yes 118366389
chr1 150135253 150135267 EBF1 JASPAR yes 32134376
chr1 150135253 150135267 EBF1 JASPAR yes 118366390
chr1 150135254 150135269 TFAP2C JASPAR yes 32134377
chr1 150135254 150135269 TFAP2C JASPAR yes 118366391
chr1 150135255 150135266 EBF1 JASPAR yes 32134378
chr1 150135255 150135266 EBF1 JASPAR yes 118366392
chr1 150135259 150135264 TFAP2A TRANSFAC yes 32134379
chr1 150135259 150135264 TFAP2A TRANSFAC yes 118366393
chr1 150135259 150135265 MZF1 JASPAR yes 32134380
chr1 150135259 150135265 MZF1 JASPAR yes 118366394
chr1 150135265 150135275 MSC JASPAR yes 32134381
chr1 150135265 150135275 MSC JASPAR yes 118366395
chr1 150135277 150135287 SP1 JASPAR yes 32134382
chr1 150135277 150135287 SP1 JASPAR yes 118366396
chr1 150135278 150135299 ZNF263 JASPAR yes 32134383
chr1 150135278 150135299 ZNF263 JASPAR yes 118366397
chr1 150135282 150135288 MZF1 JASPAR yes 32134384
chr1 150135282 150135288 MZF1 JASPAR yes 118366398
chr1 150135306 150135315 THAP1 JASPAR yes 32134385
chr1 150135306 150135315 THAP1 JASPAR yes 118366399
chr1 150135310 150135321 CDX2 JASPAR yes 32134386
chr1 150135310 150135321 CDX2 JASPAR yes 118366400
chr1 150135311 150135322 HOXA10 JASPAR yes 32134387
chr1 150135311 150135322 HOXA10 JASPAR yes 118366401
chr1 150135312 150135321 CDX1 JASPAR yes 32134388
chr1 150135312 150135321 CDX1 JASPAR yes 118366402
chr1 150135317 150135330 POU3F3 JASPAR yes 32134389
chr1 150135317 150135330 POU3F3 JASPAR yes 118366403
chr1 150135329 150135344 STAT1 JASPAR yes 32134390
chr1 150135329 150135344 STAT1 JASPAR yes 118366404
chr1 150135334 150135345 FLI1 JASPAR yes 32134391
chr1 150135334 150135345 FLI1 JASPAR yes 118366405
chr1 150135335 150135343 FEV JASPAR yes 32134392
chr1 150135335 150135343 FEV JASPAR yes 118366406
chr1 150135338 150135349 BATF JASPAR yes 32134393
chr1 150135338 150135349 BATF JASPAR yes 118366407
chr1 150135364 150135368 NFE TRANSFAC yes 32134394
chr1 150135364 150135368 NFE TRANSFAC yes 118366408
chr1 150135364 150135369 GATA1 TRANSFAC yes 32134395
chr1 150135364 150135369 GATA1 TRANSFAC yes 118366409
chr1 150135364 150135370 GATA3 JASPAR yes 32134396
chr1 150135364 150135370 GATA3 JASPAR yes 118366410
chr1 150135390 150135400 SP1 JASPAR yes 32134397
chr1 150135390 150135400 SP1 JASPAR yes 118366411
chr1 150135424 150135430 NFE2 TRANSFAC yes 32134398
chr1 150135424 150135430 NFE2 TRANSFAC yes 118366412
chr1 150135428 150135438 SP1 JASPAR yes 32134399
chr1 150135428 150135438 SP1 TRANSFAC yes 32134400
chr1 150135428 150135438 SP1 JASPAR yes 118366413
chr1 150135428 150135438 SP1 TRANSFAC yes 118366414
chr1 150135429 150135439 SP1 JASPAR yes 32134401
chr1 150135429 150135439 SP1 JASPAR yes 118366415
chr1 150135430 150135446 GLIS1 JASPAR yes 32134402
chr1 150135430 150135446 GLIS1 JASPAR yes 118366416
chr1 150135430 150135451 ZNF263 JASPAR yes 32134403
chr1 150135430 150135451 ZNF263 JASPAR yes 118366417
chr1 150135431 150135441 ZNF740 JASPAR yes 32134404
chr1 150135431 150135441 ZNF740 JASPAR yes 118366418
chr1 150135431 150135445 GLIS2 JASPAR yes 32134405
chr1 150135431 150135445 GLIS3 JASPAR yes 32134406
chr1 150135431 150135445 GLIS2 JASPAR yes 118366419
chr1 150135431 150135445 GLIS3 JASPAR yes 118366420
chr1 150135431 150135446 ZIC3 JASPAR yes 32134407
chr1 150135431 150135446 ZIC3 JASPAR yes 118366421
chr1 150135464 150135482 IRF2 JASPAR yes 32134408
chr1 150135464 150135482 IRF2 JASPAR yes 118366422
chr1 150135465 150135486 IRF1 JASPAR yes 32134409
chr1 150135465 150135486 IRF1 JASPAR yes 118366423
chr1 150135466 150135487 ZNF263 JASPAR yes 32134410
chr1 150135466 150135487 ZNF263 JASPAR yes 118366424
chr1 150135467 150135472 ETS2 TRANSFAC yes 32134411
chr1 150135467 150135472 ETS2 TRANSFAC yes 118366425
chr1 150135467 150135482 PRDM1 JASPAR yes 32134412
chr1 150135467 150135482 STAT2 JASPAR yes 32134413
chr1 150135467 150135482 PRDM1 JASPAR yes 118366426
chr1 150135467 150135482 STAT2 JASPAR yes 118366427
chr1 150135468 150135482 SPIC JASPAR yes 32134414
chr1 150135468 150135482 SPIC JASPAR yes 118366428
chr1 150135469 150135483 IRF7 JASPAR yes 32134415
chr1 150135469 150135483 IRF7 JASPAR yes 118366429
chr1 150135499 150135503 NFE TRANSFAC yes 32134416
chr1 150135499 150135503 NFE TRANSFAC yes 118366430
chr1 150135499 150135512 SMAD2 JASPAR yes 32134417
chr1 150135499 150135512 SMAD2 JASPAR yes 118366431
chr1 150135514 150135530 NFYA JASPAR yes 32134418
chr1 150135514 150135530 NFYA JASPAR yes 118366432
chr1 150135515 150135533 NFYA JASPAR yes 32134419
chr1 150135515 150135533 NFYA JASPAR yes 118366433
chr1 150135519 150135523 H1TF2 TRANSFAC yes 32134420
chr1 150135519 150135523 NFE TRANSFAC yes 32134421
chr1 150135519 150135523 SRF TRANSFAC yes 32134422
chr1 150135519 150135523 H1TF2 TRANSFAC yes 118366434
chr1 150135519 150135523 NFE TRANSFAC yes 118366435
chr1 150135519 150135523 SRF TRANSFAC yes 118366436
chr1 150135523 150135529 MZF1 JASPAR yes 32134423
chr1 150135523 150135529 MZF1 JASPAR yes 118366437
chr1 150135542 150135560 SRF JASPAR yes 32134424
chr1 150135542 150135560 SRF JASPAR yes 118366438
chr1 150135544 150135560 SRF JASPAR yes 32134425
chr1 150135544 150135560 SRF JASPAR yes 118366439
chr1 150135544 150135562 SRF JASPAR yes 32134426
chr1 150135544 150135562 SRF JASPAR yes 118366440
chr1 150135545 150135557 SRF JASPAR yes 32134427
chr1 150135545 150135557 SRF JASPAR yes 118366441
chr1 150135547 150135559 SRF JASPAR yes 32134428
chr1 150135547 150135559 SRF JASPAR yes 118366442
chr1 150135657 150135668 USF1 JASPAR yes 32134429
chr1 150135657 150135668 USF2 JASPAR yes 32134430
chr1 150135657 150135668 USF1 JASPAR yes 118366443
chr1 150135657 150135668 USF2 JASPAR yes 118366444
chr1 150135659 150135672 NR2F1 JASPAR yes 32134431
chr1 150135659 150135672 NR2F1 JASPAR yes 118366445
chr1 150135661 150135672 ESRRA JASPAR yes 32134432
chr1 150135661 150135672 ESRRA JASPAR yes 118366446
chr1 150135675 150135679 YY1 TRANSFAC yes 32134433
chr1 150135675 150135679 YY1 TRANSFAC yes 118366447
chr1 150135689 150135701 PKNOX2 JASPAR yes 32134434
chr1 150135689 150135701 PKNOX2 JASPAR yes 118366448
chr1 150135721 150135732 FOXA1 JASPAR yes 118366449
chr1 150135731 150135737 MZF1 JASPAR yes 118366450
chr1 150135749 150135760 EBF1 JASPAR yes 118366451
SNP sites on vista3250[chr1:150135231-150135764]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 150135291 rs72694957 C T
EBF1 POLR2A ZNF263
620200
chr1 150135367 rs184204153 A G
EBF1 GATA1 GATA3 NFE POLR2A
620201
chr1 150135473 rs137895377 T G
IRF1 IRF2 IRF7 POLR2A PRDM1 SPIC SRF STAT2 ZNF263
620202
chr1 150135545 rs187124086 A G
POLR2A RUNX3 SRF
620203
chr1 150135565 rs143027411 G A
POLR2A RUNX3 SRF
620204
chr1 150135594 rs112303719 A AAC
POLR2A RUNX3 SRF
620205
chr1 150135594 rs35544282 A AAC,AACAC
POLR2A RUNX3 SRF
620206
chr1 150135594 rs372992934 AACAC A
POLR2A RUNX3 SRF
620207
chr1 150135594 rs587593792 AACAC A
POLR2A RUNX3 SRF
620208
chr1 150135594 rs587701381 A AAC,AACAC
POLR2A RUNX3 SRF
620209
chr1 150135719 rs587670880 G A
POLR2A RUNX3
620210
Genes possibly regulated by vista3250[chr1:150135231-150135764]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 150039369 150117505 + VPS45 ENSG00000136631.8 150039369 0.67 0.99 1155 4138
chr1 150121373 150136916 + PLEKHO1 ENSG00000023902.9 150121373 0.85 0.99 1156 86142
chr1 150190717 150208504 - ANP32E ENSG00000143401.10 150208504 0.86 0.99 1157 27260
chr1 150229554 150237478 + CA14 ENSG00000118298.6 150229554 0.92 1.0 1158 6210
Expression level of Genes
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miRNAs possibly regulated by vista3250[chr1:150135231-150135764]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results